1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGTGAGCGCCCTGTTCCAGAAGACCAAGGCTACCCCCAAGTCCGCCTACGTGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaacagaggagcagggctggcggctgccgggttgcgccacttgctcgagagggcgggtacctgggagcgtcagcgttgtggccgccgctctgt...
species | Chlamydomonas reinhardtii |
transcript | EDO97077 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGEST: gi|7426921|gb|AW661094.1|AW661094
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGEST: gi|49465957|gb|BP093870.1|BP093870
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGCTTCEST: gi|49462436|gb|BP090349.1|BP090349
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGCTTC
EST: TGCCTGGACTGGCGGCTACCATGTACGATGAGCCCACTCCCTTCGAGGAG GTCAAGGCATACGTGTGCCCCTGTGTGCAACTGCCCCCAACGCGCCGCTTCEST: gi|14238469|gb|BG857285.1|BG857285
genomic: TGCCTGGACTG-CGGCTACC-TGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCC-GTGTGCAAC-GCCCCCAA-GCGCCGCTTC
EST: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGEST: gi|49458354|gb|BP086267.1|BP086267
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGEST: gi|15696153|gb|BI720458.1|BI720458
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGEST: gi|10780539|gb|AV637219.1|AV637219
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGEST: gi|10774609|gb|AV625432.1|AV625432
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: TGTGCCTGGACTGCGGCTACCT-TACGATGAGCCCACTCCCTTCGAGGAG GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGEST: gi|10777950|gb|AV634630.1|AV634630
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGEST: gi|10778230|gb|AV634910.1|AV634910
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGEST: gi|16432240|gb|BI997466.1|BI997466
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGEST: gi|23366445|gb|BU654265.1|BU654265
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGEST: gi|10768987|gb|AV619812.1|AV619812
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGEST: gi|10771558|gb|AV622381.1|AV622381
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGEST: gi|49463184|gb|BP091097.1|BP091097
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGEST: gi|15372567|gb|BI531993.1|BI531993
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGEST: gi|14229609|gb|BG848441.1|BG848441
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTGAGCGCCCTGTTCCAGAAGACCAAGGCTACCCCCAAGTCCGCCTACGTGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaacagaggagcagggctggcggctgccgggttgcgccacttgctcgagagggcgggtacctgggagcgtcagcgttgtggccgccgctctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgtgg