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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGACAAAGTTCTTCTTGAAAGTCTTCACTTACTCGCATACACGCACGCACGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAGgtgaggctttgggtggctgggcagcgcttgcgcaccagccagtggccatgcttgaaatagccacaaagcgcttctgaagagagcttccagagataccctc...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97077
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10127601|gb|BE726305.1|BE726305
EST:     CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAG                         TCGGTTGTTCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
genomic: CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAGgtgaggcttt ... acccctgtagTCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
EST: gi|7426921|gb|AW661094.1|AW661094
EST:     CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAG                         TCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
genomic: CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAGgtgaggcttt ... acccctgtagTCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
EST: gi|49465957|gb|BP093870.1|BP093870
EST:     CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAG                         TCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
genomic: CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAGgtgaggcttt ... acccctgtagTCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
EST: gi|49462436|gb|BP090349.1|BP090349
EST:     CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAG                         TCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
genomic: CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAGgtgaggcttt ... acccctgtagTCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
EST: gi|14238469|gb|BG857285.1|BG857285
EST:     CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAG                         TCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
genomic: CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAGgtgaggcttt ... acccctgtagTCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
EST: gi|10779724|gb|AV636404.1|AV636404
EST:     CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAG                         TCGGCTGTGCG
genomic: CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAGgtgaggcttt ... acccctgtagTCGGCTGTGCG
EST: gi|49458354|gb|BP086267.1|BP086267
EST:     CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAG                         TCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
genomic: CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAGgtgaggcttt ... acccctgtagTCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
EST: gi|15696153|gb|BI720458.1|BI720458
EST:     CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAG                         TCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
genomic: CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAGgtgaggcttt ... acccctgtagTCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
EST: gi|10780539|gb|AV637219.1|AV637219
EST:     CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAG                         TCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
genomic: CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAGgtgaggcttt ... acccctgtagTCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
EST: gi|10774609|gb|AV625432.1|AV625432
EST:     GCCGGCTTCAAG                         TCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
genomic: GCCGGCTTCAAGgtgaggcttt ... acccctgtagTCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
EST: gi|10777950|gb|AV634630.1|AV634630
EST:     CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAG                         TCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
genomic: CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAGgtgaggcttt ... acccctgtagTCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
EST: gi|10778230|gb|AV634910.1|AV634910
EST:     CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAG                         TCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
genomic: CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAGgtgaggcttt ... acccctgtagTCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
EST: gi|16432240|gb|BI997466.1|BI997466
EST:     CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAG                         TCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
genomic: CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAGgtgaggcttt ... acccctgtagTCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
EST: gi|23366445|gb|BU654265.1|BU654265
EST:     CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAG                         TCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
genomic: CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAGgtgaggcttt ... acccctgtagTCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
EST: gi|10768987|gb|AV619812.1|AV619812
EST:     CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAG                         TCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
genomic: CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAGgtgaggcttt ... acccctgtagTCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
EST: gi|10771558|gb|AV622381.1|AV622381
EST:     CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAG                         TCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
genomic: CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAGgtgaggcttt ... acccctgtagTCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
EST: gi|49463184|gb|BP091097.1|BP091097
EST:     GATGGCCGCTCTGCAGAAGTCTTTCCTGNGGCAACAAGGCCGGCTTCAAG                         TCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
genomic: GATGGCCGCTCTGCAGAAGTCTTTCCTG-GGCAACAAGGCCGGCTTCAAGgtgaggcttt ... acccctgtagTCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
EST: gi|15372567|gb|BI531993.1|BI531993
EST:     CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAG                         TCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
genomic: CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAGgtgaggcttt ... acccctgtagTCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
EST: gi|14229609|gb|BG848441.1|BG848441
EST:     CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAG                         TCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC
genomic: CGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAGgtgaggcttt ... acccctgtagTCGGCTGTGCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGACAAAGTTCTTCTTGAAAGTCTTCACTTACTCGCATACACGCACGCACGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAGgtgaggctttgggtggctgggcagcgcttgcgcaccagccagtggccatgcttgaaatagccacaaagcgcttctgaagagagcttccagagataccctc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaaag