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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttggccccccggtactgctcttgctctgctgtcatttgtatgtacggcatgtgcggcttttccatgtaaagggggcctcgcgtgccctggctgc...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97077
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10127601|gb|BE726305.1|BE726305
EST:     GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG                         CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: gi|34981108|gb|CF555025.1|CF555025
EST:     GCCCCGTGTGCAACGCCCCCAAGCGCCG                         CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
genomic: GCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: gi|7426921|gb|AW661094.1|AW661094
EST:     GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG                         CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: gi|14238469|gb|BG857285.1|BG857285
EST:     GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG                         CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: gi|34983064|gb|CF556981.1|CF556981
EST:     GCCCCGTGTGCAACGCCCCCAAGCGCCG                         CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
genomic: GCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: gi|49458354|gb|BP086267.1|BP086267
EST:     GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG                         CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: gi|15696153|gb|BI720458.1|BI720458
EST:     GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG                         CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: gi|10780539|gb|AV637219.1|AV637219
EST:     GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG                         CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: gi|10774609|gb|AV625432.1|AV625432
EST:     GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG                         CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: gi|10777950|gb|AV634630.1|AV634630
EST:     GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG                         CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: gi|10778230|gb|AV634910.1|AV634910
EST:     GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG                         CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: gi|16432240|gb|BI997466.1|BI997466
EST:     GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG                         CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: gi|23366445|gb|BU654265.1|BU654265
EST:     GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG                         CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: gi|10768987|gb|AV619812.1|AV619812
EST:     GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG                         CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: gi|10771558|gb|AV622381.1|AV622381
EST:     GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG                         CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: gi|49463184|gb|BP091097.1|BP091097
EST:     GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG                         CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: gi|15372567|gb|BI531993.1|BI531993
EST:     GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG                         CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: gi|14229609|gb|BG848441.1|BG848441
EST:     GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG                         CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: gi|34981107|gb|CF555024.1|CF555024
EST:     GCCCCGTGTGCAACGCCCCCAAGCGCCG                         CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
genomic: GCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttggccccccggtactgctcttgctctgctgtcatttgtatgtacggcatgtgcggcttttccatgtaaagggggcctcgcgtgccctggctgc

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