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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcgaggacccctgtcgaggactgtctggcctgtttccggcggcctgcagcaaccgggttgtgtttttcttgcggcgcggtgcccccccccaccgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97077
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10127601|gb|BE726305.1|BE726305
EST:     TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG                         GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: gi|7426921|gb|AW661094.1|AW661094
EST:     TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG                         GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: gi|49465957|gb|BP093870.1|BP093870
EST:     TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG                         GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGCTTC
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGCTTC
EST: gi|49462436|gb|BP090349.1|BP090349
EST:     TGCCTGGACTGGCGGCTACCATGTACGATGAGCCCACTCCCTTCGAGGAG                         GTCAAGGCATACGTGTGCCCCTGTGTGCAACTGCCCCCAACGCGCCGCTTC
genomic: TGCCTGGACTG-CGGCTACC-TGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCC-GTGTGCAAC-GCCCCCAA-GCGCCGCTTC
EST: gi|14238469|gb|BG857285.1|BG857285
EST:     TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG                         GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: gi|49458354|gb|BP086267.1|BP086267
EST:     TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG                         GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: gi|15696153|gb|BI720458.1|BI720458
EST:     TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG                         GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: gi|10780539|gb|AV637219.1|AV637219
EST:     TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG                         GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: gi|10774609|gb|AV625432.1|AV625432
EST:     TGTGCCTGGACTGCGGCTACCT-TACGATGAGCCCACTCCCTTCGAGGAG                         GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: gi|10777950|gb|AV634630.1|AV634630
EST:     TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG                         GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: gi|10778230|gb|AV634910.1|AV634910
EST:     TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG                         GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: gi|16432240|gb|BI997466.1|BI997466
EST:     TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG                         GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: gi|23366445|gb|BU654265.1|BU654265
EST:     TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG                         GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: gi|10768987|gb|AV619812.1|AV619812
EST:     TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG                         GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: gi|10771558|gb|AV622381.1|AV622381
EST:     TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG                         GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: gi|49463184|gb|BP091097.1|BP091097
EST:     TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG                         GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: gi|15372567|gb|BI531993.1|BI531993
EST:     TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG                         GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
EST: gi|14229609|gb|BG848441.1|BG848441
EST:     TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAG                         GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
genomic: TGTGCCTGGACTGCGGCTACCTGTACGATGAGCCCACTCCCTTCGAGGAGgtgcgcacaa ... accgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagcaaccgggttgtgtttttcttgcggcgcggtgcccccccccaccgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG
                                    cccccccccaccgcc  CT-rich tract
                 tttttctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcgaggacccctgtcgaggactgtctggcctgtttccggcggcctgcagcaaccgggttgtgtttttcttgcggcgcggtgcccccccccaccgccacagGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG

- - - - - - - - - - - - - - - - - - - - - - - cagcaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt