1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggggcacacggcgccttgaggtgtcgccgatgctaccgcatgtcgcagcgttgttacaccgtgtggcccctcgtcccacccatggcccgccttcgtgcagGCCACCCGCGCCTACCTGCACCGTGAGGAGGACGTGGAGGCTGCCCTCAAGCGCGCCGGCTTCAAGGTCACCAAGCGTGAGATGACCGCCACCAGCTTCT
species | Chlamydomonas reinhardtii |
transcript | EDO97000 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGTACAGCATCCTCAAGCGCATTGGCGAGCTGTTCCCCGGCCCCAGCAAG GCCACCCGCGCCTACCTGCACCGTGAGGAGGACGTGGAGGCTGCCCTCAAGEST: gi|10770996|gb|AV621819.1|AV621819
genomic: CGTACAGCATCCTCAAGCGCATTGGCGAGCTGTTCCCCGGCCCCAGCAAGgtgcgcagcc ... cttcgtgcagGCCACCCGCGCCTACCTGCACCGTGAGGAGGACGTGGAGGCTGCCCTCAAG
EST: CGTACAGCATCCTCAAGCGCATTGGCGAGCTGTTCCCCGGCCCCAGCAAG GCCACCCGCGCCTACCTGCACCGTGAGGAGGACGTGGAGGCTGCCCTCAAGEST: gi|6546348|gb|AV392132.1|AV392132
genomic: CGTACAGCATCCTCAAGCGCATTGGCGAGCTGTTCCCCGGCCCCAGCAAGgtgcgcagcc ... cttcgtgcagGCCACCCGCGCCTACCTGCACCGTGAGGAGGACGTGGAGGCTGCCCTCAAG
EST: CGTACAGCATCCTCAAGCGCATTGGCGAGCTGTTCCCCGGCCCCAGCAAG GCCACCCGCGCCTACCTGCACCGTGAGGAGGACGTGGAGGCTGTCCTCA-GEST: gi|14230416|gb|BG849232.1|BG849232
genomic: CGTACAGCATCCTCAAGCGCATTGGCGAGCTGTTCCCCGGCCCCAGCAAGgtgcgcagcc ... cttcgtgcagGCCACCCGCGCCTACCTGCACCGTGAGGAGGACGTGGAGGCTGCCCTCAAG
EST: CGTACAGCATCCTCAAGCGCATTGGCGAGCTGTTCCCCGGCCCCAGCAAG GCCACCCGCGCCTACCTGCACCGTGAGGAGGACGTGGAGGCTGCCCTCAAGEST: gi|14227419|gb|BG846235.1|BG846235
genomic: CGTACAGCATCCTCAAGCGCATTGGCGAGCTGTTCCCCGGCCCCAGCAAGgtgcgcagcc ... cttcgtgcagGCCACCCGCGCCTACCTGCACCGTGAGGAGGACGTGGAGGCTGCCCTCAAG
EST: CAAGCGCATTGGCGAGCTGTTCCCCGGCCCCAGCAAG GCCACCCGCGCCTACCTGCACCGTGAGGAGGACGTGGAGGCTGCCCTCAAG
genomic: CAAGCGCATTGGCGAGCTGTTCCCCGGCCCCAGCAAGgtgcgcagcc ... cttcgtgcagGCCACCCGCGCCTACCTGCACCGTGAGGAGGACGTGGAGGCTGCCCTCAAG
cagcgttgttacaccgtgtggcccctcgtcccacccatggcccgccttcgtgcagGCCACCCGCGCCTACCTGCACCGTGAGGAGGACGTGGAGGCTGCCCTCAAGCGCGCCGGCTTCAAGGTCACCAAGCGTGAGATGACCGCCACCAGCTTCT
cccgccttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggggcacacggcgccttgaggtgtcgccgatgctaccgcatgtcgcagcgttgttacaccgtgtggcccctcgtcccacccatggcccgccttcgtgcagGCCACCCGCGCCTACCTGCACCGTGAGGAGGACGTGGAGGCTGCCCTCAAGCGCGCCGGCTTCAAGGTCACCAAGCGTGAGATGACCGCCACCAGCTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- -gcacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -acaccgt