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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccacacatgcttagcacgacctctcccggcaactcatgaccgcctctcctcccgctccctctgcccctcggcacacctcctcccaacacaccacccacagGCAGCCTGGCCATCCCGCTGGCGCTGCGCGGCGCCGCCGTCAGCGCCTCCGACATCTCCGCCGCCATGGCGTCTGAGGCGGAGCAGCGCTACCAGCAGGC

Basic information

species Chlamydomonas reinhardtii
transcript EDO97000
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14227401|gb|BG846217.1|BG846217
EST:     GGAGGGCAGCGTGCAGGGCATCACCGTGGCGGACTGCGGCTGCGGGACAG                         GCAGCCTGGCCATCCCGCTGGCGCTGCGCGGCGCCGCCGTCAGCGCCTCCG
genomic: GGAGGGCAGCGTGCAGGGCATCACCGTGGCGGACTGCGGCTGCGGGACAGgtgggagggg ... ccacccacagGCAGCCTGGCCATCCCGCTGGCGCTGCGCGGCGCCGCCGTCAGCGCCTCCG
EST: gi|14227420|gb|BG846236.1|BG846236
EST:     GGAGGGCAGCGTGCAGGGCATCACCGTGGCGGACTGCGGCTGCGGGACAG                         GCAGCCTGGCCATCCCGCTGGCGCTGCGCGGCGCCGCCGTCAGCGCCTCCG
genomic: GGAGGGCAGCGTGCAGGGCATCACCGTGGCGGACTGCGGCTGCGGGACAGgtgggagggg ... ccacccacagGCAGCCTGGCCATCCCGCTGGCGCTGCGCGGCGCCGCCGTCAGCGCCTCCG
EST: gi|14230417|gb|BG849233.1|BG849233
EST:     GGAGGGCAGCGTGCAGGGCATCACCGTGGCGGACTGCGGCTGCGGGACAG                         GCAGCCTGGCCATCCCGCTGGCGCTGCGCGGCGCCGCCGTCAGCGCCTCCG
genomic: GGAGGGCAGCGTGCAGGGCATCACCGTGGCGGACTGCGGCTGCGGGACAGgtgggagggg ... ccacccacagGCAGCCTGGCCATCCCGCTGGCGCTGCGCGGCGCCGCCGTCAGCGCCTCCG
EST: gi|10770996|gb|AV621819.1|AV621819
EST:     GGAGGGCAGCGTGCAGGGCATCACCGTGGCGGACTGCGGCTGCGGGACAG                         GCAGCCTGGCCATCCCGCTGGCGCTGCGCGGCGCCGCCGTCAGCGCCTCCG
genomic: GGAGGGCAGCGTGCAGGGCATCACCGTGGCGGACTGCGGCTGCGGGACAGgtgggagggg ... ccacccacagGCAGCCTGGCCATCCCGCTGGCGCTGCGCGGCGCCGCCGTCAGCGCCTCCG
EST: gi|16431159|gb|BI996385.1|BI996385
EST:     GGAGGGCAGCGTGCAGGGCATCACCGTGGCGGACTGCGGCTGCGGGACAG                         GCAGCCTGGCCATCCCGCTGGCGCTGCGCGGCGCCGCCGTCAGCG
genomic: GGAGGGCAGCGTGCAGGGCATCACCGTGGCGGACTGCGGCTGCGGGACAGgtgggagggg ... ccacccacagGCAGCCTGGCCATCCCGCTGGCGCTGCGCGGCGCCGCCGTCAGCG
EST: gi|6546348|gb|AV392132.1|AV392132
EST:     GGAGGGCAGCGTGCAGGGCATCACCGTGGCGGACTGCGGCTGCGGGACAG                         GCAGCCTGGCCATCCCGCTGGCGCTGCGCGGCGCCGCCGTCAGCGCCTCCG
genomic: GGAGGGCAGCGTGCAGGGCATCACCGTGGCGGACTGCGGCTGCGGGACAGgtgggagggg ... ccacccacagGCAGCCTGGCCATCCCGCTGGCGCTGCGCGGCGCCGCCGTCAGCGCCTCCG
EST: gi|15697095|gb|BI721400.1|BI721400
EST:     GGAGGGCAGCGTGCAGGGCATCACCGTGGCGGACTGCGGCTGCGGGACAG                         GCAGCCTGGCCATCCCGCTGGCGC
genomic: GGAGGGCAGCGTGCAGGGCATCACCGTGGCGGACTGCGGCTGCGGGACAGgtgggagggg ... ccacccacagGCAGCCTGGCCATCCCGCTGGCGC
EST: gi|16433031|gb|BI998257.1|BI998257
EST:     GGAGGGCAGCGTGCAGGGCATCACCGTGGCGGACTGCGGCTGCGGGACAG                         GCAGCCTGGCCATCCCGCTGGCGCTGCGCGGCGCCGCCGTCAGCGCCTCCG
genomic: GGAGGGCAGCGTGCAGGGCATCACCGTGGCGGACTGCGGCTGCGGGACAGgtgggagggg ... ccacccacagGCAGCCTGGCCATCCCGCTGGCGCTGCGCGGCGCCGCCGTCAGCGCCTCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccacacatgcttagcacgacctctcccggcaactcatgaccgcctctcctcccgctccctctgcccctcggcacacctcctcccaacacaccacccacagGCAGCCTGGCCATCCCGCTGGCGCTGCGCGGCGCCGCCGTCAGCGCCTCCGACATCTCCGCCGCCATGGCGTCTGAGGCGGAGCAGCGCTACCAGCAGGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
ccacaca
- - - - - - - - - - - - - - -caactca