1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTCCGTCAAGGGCAAGTACGACACGGTCACTTGCCTGGACGTGATGATTCACTACCCCCAGgtgcggccggggcccggtgcggattgggcgggcgtgtcgtttgcacacgttgtgtgttggaaagagtcaactgctagcccacatgaacccatacaagccg...
species | Chlamydomonas reinhardtii |
transcript | EDO97000 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GATGATTCACTACCCCCCAG GACAAGGTGGACGCCATGATCACGCACCTGGCGGGTCTGTCCGACC-CCGEST: gi|10770996|gb|AV621819.1|AV621819
genomic: GATGATTCACTA-CCCCCAGgtgcggccgg ... caccccgcagGACAAGGTGGACGCCATGATCACGCACCTGGCGGGTCTGTCCGACCGCC-
EST: GCAAGTACGACACGGTCACTTGCCTGGACGTGATGATTCACTACCCCCAG GACAAGGTGGACGCCATGATCACGCACCTGGCGGGTCTGTCCGACCGCCGCEST: gi|6546348|gb|AV392132.1|AV392132
genomic: GCAAGTACGACACGGTCACTTGCCTGGACGTGATGATTCACTACCCCCAGgtgcggccgg ... caccccgcagGACAAGGTGGACGCCATGATCACGCACCTGGCGGGTCTGTCCGACCGCCGC
EST: GCAAGTACGACACGGTCACTTGCCTGGACGTGATGATTCACTACCCCCAG GACAAGGTGGACGCCATGATCACGCACCTGGCGGGTCTGTCCGACCGCCGCEST: gi|14230416|gb|BG849232.1|BG849232
genomic: GCAAGTACGACACGGTCACTTGCCTGGACGTGATGATTCACTACCCCCAGgtgcggccgg ... caccccgcagGACAAGGTGGACGCCATGATCACGCACCTGGCGGGTCTGTCCGACCGCCGC
EST: CACTACCCCCAG GACAAGGTGGACGCCATGATCACGCACCTGGCGGGTCTGTCCGACCGCCGC
genomic: CACTACCCCCAGgtgcggccgg ... caccccgcagGACAAGGTGGACGCCATGATCACGCACCTGGCGGGTCTGTCCGACCGCCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCGTCAAGGGCAAGTACGACACGGTCACTTGCCTGGACGTGATGATTCACTACCCCCAGgtgcggccggggcccggtgcggattgggcgggcgtgtcgtttgcacacgttgtgtgttggaaagagtcaactgctagcccacatgaacccatacaagccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacacgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacaag