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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGGCGTCTGAGGCGGAGCAGCGCTACCAGCAGGCGGTGGCGGCCGGGCAGGGCAAGGCGCCCAAGGTGGCGCCCAAGTTCGAGGCGCTGGACCTGGAgtgagtgctggggagagagaggacgggagagggagggcgcgaggaaggaacgagggaacaaaggggagggggataggagaactggtggttggaacaaaag...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97000
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14227401|gb|BG846217.1|BG846217
EST:     CAGGGCAAGGCGCCCAAGGTGGCGCCCAAGTTCGAGGCGCTGGACCTGGA                         GTCCGTCAAGGGCAAGTACG
genomic: CAGGGCAAGGCGCCCAAGGTGGCGCCCAAGTTCGAGGCGCTGGACCTGGAgtgagtgctg ... actgccgcagGTCCGTCAAGGGCAAGTACG
EST: gi|14227420|gb|BG846236.1|BG846236
EST:     AGGGCAAGGCGCCCAAGGTGGCGCCCAAGTTTC-AGGCGCTGGACCTGGA                         GTCCG-CAAGGGCAAGAACGA
genomic: AGGGCAAGGCGCCCAAGGTGGCGCCCAAGTT-CGAGGCGCTGGACCTGGAgtgagtgctg ... actgccgcagGTCCGTCAAGGGCAAGTACGA
EST: gi|14230417|gb|BG849233.1|BG849233
EST:     CAGGGCAAGGCGCCCAAGGTGGCGCCCAAGTTCGAGGCGCTGGACCTGGA                         GTCCGTCAAGGGCA
genomic: CAGGGCAAGGCGCCCAAGGTGGCGCCCAAGTTCGAGGCGCTGGACCTGGAgtgagtgctg ... actgccgcagGTCCGTCAAGGGCA
EST: gi|10770996|gb|AV621819.1|AV621819
EST:     CAGGGCAAGGCGCCCAAGGTGGCGCCCAAGTTCGAGGCGCTGGACCTGGA                         GTCCGTCAAGGGCAAGTACGACACGGTCACTTGCCTGGACGTGATGATTCA
genomic: CAGGGCAAGGCGCCCAAGGTGGCGCCCAAGTTCGAGGCGCTGGACCTGGAgtgagtgctg ... actgccgcagGTCCGTCAAGGGCAAGTACGACACGGTCACTTGCCTGGACGTGATGATTCA
EST: gi|6546348|gb|AV392132.1|AV392132
EST:     CAGGGCAAGGCGCCCAAGGTGGCGCCCAAGTTCGAGGCGCTGGACCTGGA                         GTCCGTCAAGGGCAAGTACGACACGGTCACTTGCCTGGACGTGATGATTCA
genomic: CAGGGCAAGGCGCCCAAGGTGGCGCCCAAGTTCGAGGCGCTGGACCTGGAgtgagtgctg ... actgccgcagGTCCGTCAAGGGCAAGTACGACACGGTCACTTGCCTGGACGTGATGATTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCATGGCGTCTGAGGCGGAGCAGCGCTACCAGCAGGCGGTGGCGGCCGGGCAGGGCAAGGCGCCCAAGGTGGCGCCCAAGTTCGAGGCGCTGGACCTGGAgtgagtgctggggagagagaggacgggagagggagggcgcgaggaaggaacgagggaacaaaggggagggggataggagaactggtggttggaacaaaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa