1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agctagcgcgacaaccacgccagcaacagccacgtcgctccgcgcactcgcgcccgcagcgaccacctcccctcaccccctccccccatcaccccatcagGTGAAGGACTACTTCAACACTGCCGGCTTCGAGCGCTGGCGCAAGATCTACGGCGAGACGGACGAGGTGAACAAGGTGCAGCTGGACATCCGCACTGGCC
species | Chlamydomonas reinhardtii |
transcript | EDO97000 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGCTCGGAGCAGATGAAGTCATTCGACGGCGATGAGAAGGAGGCG GTGAAGGACTACTTCAACACTGCCGGCTTCGAGCGCTGGCGCAAGATCTACEST: gi|14227420|gb|BG846236.1|BG846236
genomic: CCGCTCGGAGCAGATGAAGTCATTCGACGGCGATGAGAAGGAGGCGgtgagtccaa ... accccatcagGTGAAGGACTACTTCAACACTGCCGGCTTCGAGCGCTGGCGCAAGATCTAC
EST: CCGCTCGGAGCAGATGAAGTCATTCGACGGCGATGAGAAGGAGGCG GTGAAGGACTACTTCAACACTGCCGGCTTCGAGCGCTGGCGCAAGATCTACEST: gi|14230417|gb|BG849233.1|BG849233
genomic: CCGCTCGGAGCAGATGAAGTCATTCGACGGCGATGAGAAGGAGGCGgtgagtccaa ... accccatcagGTGAAGGACTACTTCAACACTGCCGGCTTCGAGCGCTGGCGCAAGATCTAC
EST: CCGCTCGGAGCAGATGAAGTCATTCGACGGCGATGAGAAGGAGGCG GTGAAGGACTACTTCAACACTGCCGGCTTCGAGCGCTGGCGCAAGATCTACEST: gi|16431159|gb|BI996385.1|BI996385
genomic: CCGCTCGGAGCAGATGAAGTCATTCGACGGCGATGAGAAGGAGGCGgtgagtccaa ... accccatcagGTGAAGGACTACTTCAACACTGCCGGCTTCGAGCGCTGGCGCAAGATCTAC
EST: CCGCTCGGAGCAGATGAAGTCATTCGACGGCGATGAGAAGGAGGCG GTGAAGGACTACTTCAACACTGCCGGCTTCGAGCGCTGGCGCAAGATCTACEST: gi|15697095|gb|BI721400.1|BI721400
genomic: CCGCTCGGAGCAGATGAAGTCATTCGACGGCGATGAGAAGGAGGCGgtgagtccaa ... accccatcagGTGAAGGACTACTTCAACACTGCCGGCTTCGAGCGCTGGCGCAAGATCTAC
EST: CCGCTCGGAGCAGATGAAGTCATTCGACGGCGATGAGAAGGAGGCG GTGAAGGACTACTTCAACACTGCCGGCTTCGAGCGCTGGCGCAAGATCTACEST: gi|14233488|gb|BG852304.1|BG852304
genomic: CCGCTCGGAGCAGATGAAGTCATTCGACGGCGATGAGAAGGAGGCGgtgagtccaa ... accccatcagGTGAAGGACTACTTCAACACTGCCGGCTTCGAGCGCTGGCGCAAGATCTAC
EST: CCGCTCGGAGCAGATGAAGTCATTCGACGGCGATGAGAAGGAGGCG GTGAAGGACTACTTCAACACTGCCGGCTTCGAGCGCTGGCGCAAGATCTACEST: gi|16433031|gb|BI998257.1|BI998257
genomic: CCGCTCGGAGCAGATGAAGTCATTCGACGGCGATGAGAAGGAGGCGgtgagtccaa ... accccatcagGTGAAGGACTACTTCAACACTGCCGGCTTCGAGCGCTGGCGCAAGATCTAC
EST: CCGCTCGGAGCAGATGAAGTCATTCGACGGCGATGAGAAGGAGGCG GTGAAGGACTACTTCAACACTGCCGGCTTCGAGCGCTGGCGCAAGATCTAC
genomic: CCGCTCGGAGCAGATGAAGTCATTCGACGGCGATGAGAAGGAGGCGgtgagtccaa ... accccatcagGTGAAGGACTACTTCAACACTGCCGGCTTCGAGCGCTGGCGCAAGATCTAC
actcgcgcccgcagcgaccacctcccctcaccccctccccccatcaccccatcagGTGAAGGACTACTTCAACACTGCCGGCTTCGAGCGCTGGCGCAAGATCTACGGCGAGACGGACGAGGTGAACAAGGTGCAGCTGGACATCCGCACTGGCC
ccctcac putative branch site (score: 3)
ccacctcccctcaccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctagcgcgacaaccacgccagcaacagccacgtcgctccgcgcactcgcgcccgcagcgaccacctcccctcaccccctccccccatcaccccatcagGTGAAGGACTACTTCAACACTGCCGGCTTCGAGCGCTGGCGCAAGATCTACGGCGAGACGGACGAGGTGAACAAGGTGCAGCTGGACATCCGCACTGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - acaacca
- - - - - - - - - - - - -acagcca
- - - - - - - - - - - - - - - - - - - - - -gcactcg