1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggcccgcgaccgagcgcgggcgagggctgccgtgcgtgcgtgtttccgaaccccaaccgaccaagctgtcgcctttccgcacccgccctcactgccgcagGTCCGTCAAGGGCAAGTACGACACGGTCACTTGCCTGGACGTGATGATTCACTACCCCCAG
species | Chlamydomonas reinhardtii |
transcript | EDO97000 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGGGCAAGGCGCCCAAGGTGGCGCCCAAGTTCGAGGCGCTGGACCTGGA GTCCGTCAAGGGCAAGTACGEST: gi|14227420|gb|BG846236.1|BG846236
genomic: CAGGGCAAGGCGCCCAAGGTGGCGCCCAAGTTCGAGGCGCTGGACCTGGAgtgagtgctg ... actgccgcagGTCCGTCAAGGGCAAGTACG
EST: AGGGCAAGGCGCCCAAGGTGGCGCCCAAGTTTC-AGGCGCTGGACCTGGA GTCCG-CAAGGGCAAGAACGAEST: gi|14230417|gb|BG849233.1|BG849233
genomic: AGGGCAAGGCGCCCAAGGTGGCGCCCAAGTT-CGAGGCGCTGGACCTGGAgtgagtgctg ... actgccgcagGTCCGTCAAGGGCAAGTACGA
EST: CAGGGCAAGGCGCCCAAGGTGGCGCCCAAGTTCGAGGCGCTGGACCTGGA GTCCGTCAAGGGCAEST: gi|10770996|gb|AV621819.1|AV621819
genomic: CAGGGCAAGGCGCCCAAGGTGGCGCCCAAGTTCGAGGCGCTGGACCTGGAgtgagtgctg ... actgccgcagGTCCGTCAAGGGCA
EST: CAGGGCAAGGCGCCCAAGGTGGCGCCCAAGTTCGAGGCGCTGGACCTGGA GTCCGTCAAGGGCAAGTACGACACGGTCACTTGCCTGGACGTGATGATTCAEST: gi|6546348|gb|AV392132.1|AV392132
genomic: CAGGGCAAGGCGCCCAAGGTGGCGCCCAAGTTCGAGGCGCTGGACCTGGAgtgagtgctg ... actgccgcagGTCCGTCAAGGGCAAGTACGACACGGTCACTTGCCTGGACGTGATGATTCA
EST: CAGGGCAAGGCGCCCAAGGTGGCGCCCAAGTTCGAGGCGCTGGACCTGGA GTCCGTCAAGGGCAAGTACGACACGGTCACTTGCCTGGACGTGATGATTCA
genomic: CAGGGCAAGGCGCCCAAGGTGGCGCCCAAGTTCGAGGCGCTGGACCTGGAgtgagtgctg ... actgccgcagGTCCGTCAAGGGCAAGTACGACACGGTCACTTGCCTGGACGTGATGATTCA
ccgaaccccaaccgaccaagctgtcgcctttccgcacccgccctcactgccgcagGTCCGTCAAGGGCAAGTACGACACGGTCACTTGCCTGGACGTGATGATTCACTACCCCCAG
ccctcac putative branch site (score: 3)
ccctcact CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcccgcgaccgagcgcgggcgagggctgccgtgcgtgcgtgtttccgaaccccaaccgaccaagctgtcgcctttccgcacccgccctcactgccgcagGTCCGTCAAGGGCAAGTACGACACGGTCACTTGCCTGGACGTGATGATTCACTACCCCCAG
- - - - - - - - - - - - - - - - - - tgcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - aacccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacccg