1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGTCGCTACCAGATGAAGGCCGAGATCTACAAGCGCGGACCCATCAGCTGCGGCATTGATGCCACCGACCAGCTTGAGAgtgagtcgcgcgcagttgccctgctacatttctcgatgaaatgcaatgcgcgccctctgcagggcgtggcacaggctagctgttgggacccttgcctccaacctgcatgcccgcattctgacctgctggattatgttactgcacctgcgcag
species | Chlamydomonas reinhardtii |
transcript | EDO96963 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAAGCGCGGACCCATCAGCTGCGGCATTGATGCCACCGACCAGCTTGAGA CCTACACCGGCGGTGTGTATGCGGAGCGGAAGAGCAACCCCAGTATCAACCEST: gi|10771654|gb|AV622477.1|AV622477
genomic: CAAGCGCGGACCCATCAGCTGCGGCATTGATGCCACCGACCAGCTTGAGAgtgagtcgcg ... acctgcgcagCCTACACCGGCGGTGTGTATGCGGAGCGGAAGAGCAACCCCAGTATCAACC
EST: CAAGCGCGGACCCATCAGCTGCGGCATTGATGCCACCGACCAGCTTGAGA CCTACACCGGCGGTGTGTATGCGGAGCGGAAEST: gi|15370065|gb|BI529491.1|BI529491
genomic: CAAGCGCGGACCCATCAGCTGCGGCATTGATGCCACCGACCAGCTTGAGAgtgagtcgcg ... acctgcgcagCCTACACCGGCGGTGTGTATGCGGAGCGGAA
EST: CAAGCGCGGACCCATCAGCTGCGGCATTGATGCCACCGACCAGCTTGAGA CCTACACCCGGCGGTGTGTATGCGGAGCGCTAGAGCAACCCCAGTATCAACEST: gi|9028046|gb|BE238086.1|BE238086
genomic: CAAGCGCGGACCCATCAGCTGCGGCATTGATGCCACCGACCAGCTTGAGAgtgagtcgcg ... acctgcgcagCCTACACC-GGCGGTGTGTATGCGGAGCGGAAGAGCAACCCCAGTATCAAC
EST: CAAGCGCGGACCCATCAGCTGCGGCATTGATGCCACCGACCAGCTTGAGA CCTACACCGGCGGTGTGTATGCGGAGCGGAAGAGCAACCCCAGTATCAACC
genomic: CAAGCGCGGACCCATCAGCTGCGGCATTGATGCCACCGACCAGCTTGAGAgtgagtcgcg ... acctgcgcagCCTACACCGGCGGTGTGTATGCGGAGCGGAAGAGCAACCCCAGTATCAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCGCTACCAGATGAAGGCCGAGATCTACAAGCGCGGACCCATCAGCTGCGGCATTGATGCCACCGACCAGCTTGAGAgtgagtcgcgcgcagttgccctgctacatttctcgatgaaatgcaatgcgcgccctctgcagggcgtggcacaggctagctgttgggacccttgcctccaacctgcatgcccgcattctgacctgctggattatgttactgcacctgcgcag
- - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - AGCTGC