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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcagatgtgtgcaattgctcttatcctgaggttgaaccggctgaatcccagggctgccagcacaagcgcgtcccaggcgacaccgaggacatgcgcagcgatcttgaccaacgctttgtgtccctttgctacccggtcgctcctcgccctctcatcccctccccgcgcccgccccccgcagTGCCACGCCATGCAGCAGTGCTTCACCTGCTGGCCCGACTCAACCTGCGAGCCCATCTACGACTACAAGCGCCTCACCGTCTCTGAGCACGGTCGCGTCA

Basic information

species Chlamydomonas reinhardtii
transcript EDO96963
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15697421|gb|BI721726.1|BI721726
EST:     GCAACCTGTATGTGGCCGCTAACCAGAAG                         TGCCACGCCATGCAGCAGTGCTTCACCTGCTGGCCCGACTCAACCTGCGAG
genomic: GCAACCTGTATGTGGCCGCTAACCAGAAGgtgcgcagat ... ccccccgcagTGCCACGCCATGCAGCAGTGCTTCACCTGCTGGCCCGACTCAACCTGCGAG
EST: gi|10771654|gb|AV622477.1|AV622477
EST:     ACGGCATTCCCCCGGACACCTGCAACCTGTATGTGGCCGCTAACCAGAAG                         TGCCACGCCATGCAGCAGTGCTTCACCTGCTGGCCCGACTCAACCTGCGAG
genomic: ACGGCATTCCCCCGGACACCTGCAACCTGTATGTGGCCGCTAACCAGAAGgtgcgcagat ... ccccccgcagTGCCACGCCATGCAGCAGTGCTTCACCTGCTGGCCCGACTCAACCTGCGAG
EST: gi|15370065|gb|BI529491.1|BI529491
EST:     ACGGCATTCCCCCGGACACCTGCAACCTGTATGTGGCCGCTAACCAGAAG                         TGCCACGCCATGCAGCAGTGCTTCACCTGCTGGCCCGACTCAACCTGCGAG
genomic: ACGGCATTCCCCCGGACACCTGCAACCTGTATGTGGCCGCTAACCAGAAGgtgcgcagat ... ccccccgcagTGCCACGCCATGCAGCAGTGCTTCACCTGCTGGCCCGACTCAACCTGCGAG
EST: gi|10771829|gb|AV622652.1|AV622652
EST:     ACGGCATTCCCCCGGACACCTGCAACCTGTATGTGGCCGCTAACCAGAAG                         TGCCACGCCATGCAGCAGTGCTTCACCTGCTGGCCCGACTCAACCTGCGAG
genomic: ACGGCATTCCCCCGGACACCTGCAACCTGTATGTGGCCGCTAACCAGAAGgtgcgcagat ... ccccccgcagTGCCACGCCATGCAGCAGTGCTTCACCTGCTGGCCCGACTCAACCTGCGAG
EST: gi|9028046|gb|BE238086.1|BE238086
EST:     ACGGCATTCCCCCGGACACCTGCAACCTGTATGTGGCCGCTAACCAGAAG                         TGCCACGCCATGCAGCAGTGCTTCACCTGCTGGCCCGACTCAACCTGCGAG
genomic: ACGGCATTCCCCCGGACACCTGCAACCTGTATGTGGCCGCTAACCAGAAGgtgcgcagat ... ccccccgcagTGCCACGCCATGCAGCAGTGCTTCACCTGCTGGCCCGACTCAACCTGCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctacccggtcgctcctcgccctctcatcccctccccgcgcccgccccccgcagTGCCACGCCATGCAGCAGTGCTTCACCTGCTGGCCCGACTCAACCTGCGAGCCCATCTACGACTACAAGCGCCTCACCGTCTCTGAGCACGGTCGCGTCA
             ctcctcgccctctcat  CT-rich tract