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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacacgccctctcaggggcagaccctcgggcatgaccgtgtgctggcgttcttcttcagttccagggctttcgcaatgcgcagtactaatgcttcgcgggcgggcttacgctgccatccttgcaatacgcgggcacgttgcctaaaccctttgctggcggctctcgcacctacagGGAGCCTGGCCCGGGACCTTCCTCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO96963
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10771654|gb|AV622477.1|AV622477
EST:     CGCACGGCGCCTCCTCGTCCCTGGCTGACCGCATGAACATCAAGATGAAG                         GGAGCCTGGCCCGGGACCTTCCTCAG
genomic: CGCACGGCGCCTCCTCGTCCCTGGCTGACCGCATGAACATCAAGATGAAGgtaaacacgc ... gcacctacagGGAGCCTGGCCCGGGACCTTCCTCAG
EST: gi|15370065|gb|BI529491.1|BI529491
EST:     GCACGGCGCCTCCTCGTCCCTGGCTGACCGCATGAACATCACTGATGAAG                         GGAGCCTGGCCCGGGACCTTCCTCAG
genomic: GCACGGCGCCTCCTCGTCCCTGGCTGACCGCATGAACATCA-AGATGAAGgtaaacacgc ... gcacctacagGGAGCCTGGCCCGGGACCTTCCTCAG
EST: gi|10771829|gb|AV622652.1|AV622652
EST:     CGCACGGCGCCTCCTCGTCCCTGGCTGACCGCATGAACATCAAGATGAAG                         GGAGCCTGGCCCGGGACCTTCCTCAG
genomic: CGCACGGCGCCTCCTCGTCCCTGGCTGACCGCATGAACATCAAGATGAAGgtaaacacgc ... gcacctacagGGAGCCTGGCCCGGGACCTTCCTCAG
EST: gi|9028046|gb|BE238086.1|BE238086
EST:     CGCACGGCGCCTCCTCGTCCCTGGCTGACCGCATGAACATCAAGATGAAG                         GGAGCCTGGCCCGGGACCTTCCTCAG
genomic: CGCACGGCGCCTCCTCGTCCCTGGCTGACCGCATGAACATCAAGATGAAGgtaaacacgc ... gcacctacagGGAGCCTGGCCCGGGACCTTCCTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaatacgcgggcacgttgcctaaaccctttgctggcggctctcgcacctacagGGAGCCTGGCCCGGGACCTTCCTCAG
                   gcctaaa  putative branch site (score: 3)
                                        ctctcgc  putative PPT