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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACGCCATGCAGCAGTGCTTCACCTGCTGGCCCGACTCAACCTGCGAGCCCATCTACGACTACAAGCGCCTCACCGTCTCTGAGCACGGTCGCGTCAGGgtaggtgcgccgcctagctaggtgttgacaaagctgcacatgcggccaacgggtggtggcctaccgtgtgcgcgagactccacacctgaattgctgatggctgacctgcattgtcgcaatgcttacgccgcgtaacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO96963
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15697421|gb|BI721726.1|BI721726
EST:     CCATCTACGACTACAAGCGCCTCACCGTCTCTGAGCACGGTCGCGTCAGG                         GGTCGCTACCAGATGAAGGCCGAGATCTACAAGCGCGGACCCATCAGCTGC
genomic: CCATCTACGACTACAAGCGCCTCACCGTCTCTGAGCACGGTCGCGTCAGGgtaggtgcgc ... cgcgtaacagGGTCGCTACCAGATGAAGGCCGAGATCTACAAGCGCGGACCCATCAGCTGC
EST: gi|10771654|gb|AV622477.1|AV622477
EST:     CCATCTACGACTACAAGCGCCTCACCGTCTCTGAGCACGGTCGCGTCAGG                         GGTCGCTACCAGATGAAGGCCGAGATCTACAAGCGCGGACCCATCAGCTGC
genomic: CCATCTACGACTACAAGCGCCTCACCGTCTCTGAGCACGGTCGCGTCAGGgtaggtgcgc ... cgcgtaacagGGTCGCTACCAGATGAAGGCCGAGATCTACAAGCGCGGACCCATCAGCTGC
EST: gi|15370065|gb|BI529491.1|BI529491
EST:     CCATCTACGACTACAAGCGCCTCACCGTCTCTGAGCACGGTCGCGTCAGG                         GGTCGCTACCAGATGAAGGCCGAGATCTACAAGCGCGGACCCATCAGCTGC
genomic: CCATCTACGACTACAAGCGCCTCACCGTCTCTGAGCACGGTCGCGTCAGGgtaggtgcgc ... cgcgtaacagGGTCGCTACCAGATGAAGGCCGAGATCTACAAGCGCGGACCCATCAGCTGC
EST: gi|9028046|gb|BE238086.1|BE238086
EST:     CCATCTACGACTACAAGCGCCTCACCGTCTCTGAGCACGGTCGCGTCAGG                         GGTCGCTACCAGATGAAGGCCGAGATCTACAAGCGCGGACCCATCAGCTGC
genomic: CCATCTACGACTACAAGCGCCTCACCGTCTCTGAGCACGGTCGCGTCAGGgtaggtgcgc ... cgcgtaacagGGTCGCTACCAGATGAAGGCCGAGATCTACAAGCGCGGACCCATCAGCTGC