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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcggtgggcgccgtgcacaagcggggcgtgtgtcaagaatgtgccacctgtacagctgtgcgcctgtgctgccctggccgaccaaaatttcgcctcccgcccgcttcgtgcatttattaacccctacctcaccgccacctccgtggccccgctctatccacagCGTCCAGAACATCATCGACTGTGGCGGCGCCGGCTCGTGCAATGGCGGCGACGACCGCCTCGTGTACGTGTACGGTGCCAAGCACGGCATTCCCCCGGAC

Basic information

species Chlamydomonas reinhardtii
transcript EDO96963
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10771654|gb|AV622477.1|AV622477
EST:     GGAGCCTGGCCCGGGACCTTCCTCAG                         CGTCCAGAACATCATCGACTGTGGCGGCGCCGGCTCGTGCAATGGCGGCGA
genomic: GGAGCCTGGCCCGGGACCTTCCTCAGgtgcgcggtg ... ctatccacagCGTCCAGAACATCATCGACTGTGGCGGCGCCGGCTCGTGCAATGGCGGCGA
EST: gi|15370065|gb|BI529491.1|BI529491
EST:     GGAGCCTGGCCCGGGACCTTCCTCAG                         CGTCCAGAACATCATCGACTGTGGCGGCGCCGGCTCGTGCAATGGCGGCGA
genomic: GGAGCCTGGCCCGGGACCTTCCTCAGgtgcgcggtg ... ctatccacagCGTCCAGAACATCATCGACTGTGGCGGCGCCGGCTCGTGCAATGGCGGCGA
EST: gi|10771829|gb|AV622652.1|AV622652
EST:     GGAGCCTGGCCCGGGACCTTCCTCAG                         CGTCCAGAACATCATCGACTGTGGCGGCGCCGGCTCGTGCAATGGCGGCGA
genomic: GGAGCCTGGCCCGGGACCTTCCTCAGgtgcgcggtg ... ctatccacagCGTCCAGAACATCATCGACTGTGGCGGCGCCGGCTCGTGCAATGGCGGCGA
EST: gi|9028046|gb|BE238086.1|BE238086
EST:     GGAGCCTGGCCCGGGACCTTCCTCAG                         CGTCCAGAACATCATCGACTGTGGCGGCGCCGGCTCGTGCAATGGCGGCGA
genomic: GGAGCCTGGCCCGGGACCTTCCTCAGgtgcgcggtg ... ctatccacagCGTCCAGAACATCATCGACTGTGGCGGCGCCGGCTCGTGCAATGGCGGCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcatttattaacccctacctcaccgccacctccgtggccccgctctatccacagCGTCCAGAACATCATCGACTGTGGCGGCGCCGGCTCGTGCAATGGCGGCGACGACCGCCTCGTGTACGTGTACGGTGCCAAGCACGGCATTCCCCCGGAC
                                      ccccgctct  CT-rich tract
     ttattaa  TA-rich tract