1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAGCATCATCCGCAACCAGCACATCCCCAAGTACTGCGGCTCCTGTTGGGCGCACGGCGCCTCCTCGTCCCTGGCTGACCGCATGAACATCAAGATGAAGgtaaacacgccctctcaggggcagaccctcgggcatgaccgtgtgctggcgttcttcttcagttccagggctttcgcaatgcgcagtactaatgcttcgcgggcgggcttacgctgccatccttgcaatacgcgggcacgttgcctaaaccctttgctggcggctctcgcacctacag
species | Chlamydomonas reinhardtii |
transcript | EDO96963 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGCACGGCGCCTCCTCGTCCCTGGCTGACCGCATGAACATCAAGATGAAG GGAGCCTGGCCCGGGACCTTCCTCAGEST: gi|15370065|gb|BI529491.1|BI529491
genomic: CGCACGGCGCCTCCTCGTCCCTGGCTGACCGCATGAACATCAAGATGAAGgtaaacacgc ... gcacctacagGGAGCCTGGCCCGGGACCTTCCTCAG
EST: GCACGGCGCCTCCTCGTCCCTGGCTGACCGCATGAACATCACTGATGAAG GGAGCCTGGCCCGGGACCTTCCTCAGEST: gi|10771829|gb|AV622652.1|AV622652
genomic: GCACGGCGCCTCCTCGTCCCTGGCTGACCGCATGAACATCA-AGATGAAGgtaaacacgc ... gcacctacagGGAGCCTGGCCCGGGACCTTCCTCAG
EST: CGCACGGCGCCTCCTCGTCCCTGGCTGACCGCATGAACATCAAGATGAAG GGAGCCTGGCCCGGGACCTTCCTCAGEST: gi|9028046|gb|BE238086.1|BE238086
genomic: CGCACGGCGCCTCCTCGTCCCTGGCTGACCGCATGAACATCAAGATGAAGgtaaacacgc ... gcacctacagGGAGCCTGGCCCGGGACCTTCCTCAG
EST: CGCACGGCGCCTCCTCGTCCCTGGCTGACCGCATGAACATCAAGATGAAG GGAGCCTGGCCCGGGACCTTCCTCAG
genomic: CGCACGGCGCCTCCTCGTCCCTGGCTGACCGCATGAACATCAAGATGAAGgtaaacacgc ... gcacctacagGGAGCCTGGCCCGGGACCTTCCTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCATCATCCGCAACCAGCACATCCCCAAGTACTGCGGCTCCTGTTGGGCGCACGGCGCCTCCTCGTCCCTGGCTGACCGCATGAACATCAAGATGAAGgtaaacacgccctctcaggggcagaccctcgggcatgaccgtgtgctggcgttcttcttcagttccagggctttcgcaatgcgcagtactaatgcttcgcgggcgggcttacgctgccatccttgcaatacgcgggcacgttgcctaaaccctttgctggcggctctcgcacctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG