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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttttggcaccttgcttgcaaaagtaagttctattacagttgttaaatcctggaggactcagtgaaagatttagtaaactttatgttgctactgcaattttgttgtgggcttggtgaaacatgtgttctgctgatgtatgagatgtattggctgcagGATTTGATTCGTGATGTTGATCCTGATATCATCATTGGTTATAACATCTGCAAATTCGATTTACCTTATCTGATTGAG

Basic information

species Arabidopsis thaliana
transcript AT5G63960.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63960.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os11g08330.1 (Oryza sativa), 3'ss of exon 7
gttttttggcaccttgcttgcaaaagtaagttctattacagttgttaaatcctggaggactcagtgaaagatttagtaaactttatgttgctactgcaattttgttgtgggcttggtgaaacatgtgttctgctgatgtatgagatgtattggctgcagGATTTGATTCGTGATGTTGATCCTGATATCATCATTGGTTATAACATCTGCAAATTCGATTTACCTTATCTGATTGAG
                                                                                 |   |  ||||  |   | |||      ||        ||| |        |  |  |  ||     |||   | |||||||| || ||||| || || |||||||| || ||||| || || ||||||||||| || ||||| ||||| ||||||
--------------------------------------------------------------------------------gtaagtaatgctggttggagtttacaacaggtaca-cagaacttactaaaaaccaagct--gattctgattctttccagGATTTCATACGTGAAGTGGACCCTGATATTATTATTGGATACAATATCTGCAAATTTGACTTACCCTATCTTATTGAG

upper sequence: AT5G63960.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: AC196278.2_FGT004 (Zea mays), 3'ss of exon 3
gttttttggcaccttgcttgcaaaagtaagttctattacagttgttaaatcctggaggactcagtgaaagatttagtaaactttatgttgctactgcaattttgttgtgggcttggtgaaacatgtgttctgctgatgtatgagatgtattggctgcagGATTTGATTCGTGATGTTGATCCTGATATCATCATTGGTTATAACATCTGCAAATTCGATTTACCTTATCTGATTGAG
                                              |||  |      | ||    |||||   ||| || |  || ||  || || |          || |||||   || || | |     |  | | ||  |   |||   |||||||||| || ||||| || |||||||||||||| ||||| || ||||| |||||||| ||  | || ||||| ||||||
----------------------------------------------aaacac--acttattcctgaaaaga---agttaaatacattttcttattgtag----acaaaggacttggccgaaaat-tatctgattcttatttggaaataatt---tgcagGATTTCATACGTGAAGTGGATCCTGATATCATAATTGGATACAACATTTGCAAATTTGACATGCCCTATCTTATTGAG

upper sequence: AT5G63960.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA06G16110.2 (Glycine max), 3'ss of exon 7
gttttttggcaccttgcttgcaaaagtaagttctattacagttgttaaatcctggaggactcagtgaaagatttagtaaactttatgttgctactgcaattttgttgtgggcttggtgaaacatgtgttctgctgatgtatgagatgtattggctgcagGATTTGATTCGTGATGTTGATCCTGATATCATCATTGGTTATAACATCTGCAAATTCGATTTACCTTATCTGATTGAG
                                                   ||| |    |||       ||||  |||  |   |||||  | || |||| |  |     ||   | |  | | |  | ||   ||| | | ||| | ||   |||||||||| |||||||| || || || ||||| || ||||| || |||||||||||||| || || || ||||| ||||||
---------------------------------------------------ctgaata--tcatgagtcaatttgataatgtaactgttg--aatg-aattataatcctttctctattatgcttatagtttg---atggacgtgatttttttattgcagGATTTAATTCGTGAAGTGGACCCGGATATTATTATTGGATACAACATCTGCAAATTTGACTTGCCATATCTTATTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgggcttggtgaaacatgtgttctgctgatgtatgagatgtattggctgcagGATTTGATTCGTGATGTTGATCCTGATATCATCATTGGTTATAACATCTGCAAATTCGATTTACCTTATCTGATTGAG
                          tgctgat  putative branch site (score: 3)
                                        atgtatt  TA-rich tract