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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAAAAGGTCTATTTCCCATATCTTCTCATTAACAAGAAGAGGTATGCTGGTTTGCTATGGACAAATCCTCAACAGTTTGACAAAATGGACACCAAAGgtaaatcttcgtgattttacagcctctctcttattcatttcctgactaaatttcaatatcaccgactttggcag

Basic information

species Arabidopsis thaliana
transcript AT5G63960.2
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63960.2 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: LOC_Os11g08330.1 (Oryza sativa), 5'ss of exon 22
TTTGAAAAGGTCTATTTCCCATATCTTCTCATTAACAAGAAGAGGTATGCTGGTTTGCTATGGACAAATCCTCAACAGTTTGACAAAATGGACACCAAAGgtaaatcttcgtgattttacagcctctctcttattcatttcctgactaaatttcaatatcaccgactttggcag
||||| ||| |||||||||| ||||| || |||| ||||||||| ||||||||||||   |||||||||||| |  | ||||||||||||||||| |||||||  |  |  || | ||        | || | ||   ||| ||  | ||  | | | | ||     ||   ||
TTTGAGAAGATCTATTTCCCTTATCTACTGATTAGCAAGAAGAGATATGCTGGTTTGTACTGGACAAATCCTGAGAAATTTGACAAAATGGACACGAAAGgtattttcttttg-tcttgtcttagatatcatcttaccttcttgctttaacatgattctaactttgctta-tag

upper sequence: AT5G63960.2 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: GRMZM2G115245_T01 (Zea mays), 5'ss of exon 6
TTTGAAAAGGTCTATTTCCCATATCTTCTCATTAACAAGAAGAGGTATGCTGGTTTGCTATGGACAAATCCTCAACAGTTTGACAAAATGGACACCAAAGgtaaatcttcgtgattttacagcctctctcttattcatttcctgactaaatttcaatatcaccgactttggcag-----------------------------------
||||| ||||||||||| || || ||||| || | ||||||||| ||||||||||||   ||||| |||||| |  | ||||||||||||||  | |||||||   |||  |  |||  | |  |    | ||  | | |  | | |  || |  |   ||| ||  || |                                      
TTTGAGAAGGTCTATTTTCCTTACCTTCTAATCAGCAAGAAGAGATATGCTGGTTTGTACTGGACGAATCCTGAGAAATTTGACAAAATGGATGCAAAAGgtattccttttttgtttagctgtgtaaagcataaac-tattttcattggatgtgga---cacagatgttagttatccttcctttcaaatgtcttctatcttgcgtgcag

upper sequence: AT5G63960.2 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: GLYMA06G16110.1 (Glycine max), 5'ss of exon 22
TTTGAAAAGGTCTATTTCCCATATCTTCTCATTAACAAGAAGAGGTATGCTGGTTTGCTATGGACAAATCCTCAACAGTTTGACAAAATGGACACCAAAGgtaaatcttcgtgattttacagcctctctcttattcatttcctgactaaatttcaatatcaccgactttggcag
||||| ||||| || |  |||||||| || |||| ||||||||| |||||||||||| | |||||||| ||  |  | ||||||||||||||||| |||||||||  ||  |  ||          |   || || |  | |    |||| |  |||||    |  ||  ||||
TTTGAGAAGGTTTACTATCCATATCTCCTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCAGACAACTTTGACAAAATGGACACTAAAGgtaaacattactctttaccttcttgttgctttgttgaagtgcctcttaaacta-aatat----gcattgagcag

upper sequence: AT5G63960.2 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: GLYMA04G38800.2 (Glycine max), 5'ss of exon 6
TTTGAAAAGGTCTATTTCCCATATCTTCTCATTAACAAGAAGAGGTATGCTGGTTTGCTATGGACAAATCCTCAACAGTTTGACAAAATGGACACCAAAGgtaaatcttcgtgattttacagcctctctcttattcatttcctgactaaatttcaatatcaccgactttggcag
||||| ||||| || |  ||||||||  | |||| ||||||||| |||||||| ||| | |||||||| ||  |  | ||||||||||||||||| |||||||||  ||  |   |||||    |  || |  |  | | |||  || ||  | ||| |    |  ||  ||||
TTTGAGAAGGTTTACTATCCATATCTCTTGATTAGCAAGAAGAGATATGCTGGATTGTTTTGGACAAAACCAGACAACTTTGACAAAATGGACACTAAAGgtaaacattact--ctttaccttgttgctttgttgaagtgcct--ctgaaactaaattt----gcattgagcag