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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGTGCAAATTCTGTCTACGGGTTTACGGGAGCCACTGTTGGGCAGTTACCATGCTTAGAAATATCCTCGAGTGTAACTAGCTATGgtatttcttttgtgaaactgcaacttttctagacacgtagccttttaggttcgttctgatggatttgtatctttttgaag

Basic information

species Arabidopsis thaliana
transcript AT5G63960.2
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63960.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GLYMA06G16110.2 (Glycine max), 5'ss of exon 19
ATCAGTGCAAATTCTGTCTACGGGTTTACGGGAGCCACTGTTGGGCAGTTACCATGCTTAGAAATATCCTCGAGTGTAACTAGCTATGgtatttcttttgtgaaactgcaacttt-tctagacacgtagccttttaggt-----tcgttctgatggatttgtatctttttgaag-----------------------------------
|| |||||||||||||| || |||||||| || |||||  |||| ||||||||||| ||||| ||||| ||||||||||| |||||||||||| ||||  |    ||  || ||| | | | |  |||    |  |  |     | |||    || | |   ||||   |  ||                                   
ATTAGTGCAAATTCTGTTTATGGGTTTACAGGGGCCACCATTGGTCAGTTACCATGTTTAGAGATATCATCGAGTGTAACAAGCTATGgtattgctttcat----ctctaagtttgtgttgccgtgtatttctaaaattatcccttgttgaattgaaataacatctccattgagttcttattattatgtggattggatgccttgttaag

upper sequence: AT5G63960.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GLYMA04G38800.2 (Glycine max), 5'ss of exon 3
ATCAGTGCAAATTCTGTCTACGGGTTTACGGGAGCCACTGTTGGGCAGTTACCATGCTTAGAAATATCCTCGAGTGTAACTAGCTATGgtat----ttcttttgtgaaactgcaacttttctagacacgtagccttttaggttcgttctgatggatttgtatctttttgaag-----------------------------------
|| ||||| |||||||| || |||||||| || || ||  |||| ||||||||||| ||||| ||||| ||||||||||| |||||||||||    ||||| | | |  |||    |  | |  |    ||   || |   ||||||    || | |   ||||   |  ||                                   
ATTAGTGCCAATTCTGTGTATGGGTTTACAGGGGCTACCATTGGTCAGTTACCATGTTTAGAGATATCATCGAGTGTAACAAGCTATGgtattgctttcttctcttagtctgtg-ttcctgtgtatttctaaaattatcatttcgttgaattgaaataacatctccattgagttcttattgttatgttgactggatgccttgtaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124968598|gb|EL042544.1|EL042544
EST:     TGTTGGGCAGTTACCATGCTTAGAAATATCCTCGAGTGTAACTAGCTATG                         GTCGTCAGATGATTGAACAAACAAAG
genomic: TGTTGGGCAGTTACCATGCTTAGAAATATCCTCGAGTGTAACTAGCTATGgtatttcttt ... ctttttgaagGTCGTCAGATGATTGAACAAACAAAG