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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACTCAAAAATGGCTCCATTCCGTGTACTAAGTTTCGATATTGAGTGTGCAGGTCGTAAAGGACATTTTCCGGAAGCTAAGCATGATCCTGTAATCCAGgttagctgtttttgtcattttttgatatacctttttgttacctttgtttgcattcttcttgaaacaacattctcattgcttttctag

Basic information

species Arabidopsis thaliana
transcript AT5G63960.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63960.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA06G16110.2 (Glycine max), 5'ss of exon 6
ATACTCAAAAATGGCTCCATTCCGTGTACTAAGTTTCGATATTGAGTGTGCAGGTCGTAAAGGACATTTTCCGGAAGCTAAGCATGATCCTGTAATCCAGgttagctgtttttgtcattttttgatatacctttttgttacctttgtttgcattcttcttgaaacaacattctcattgcttttctag
||| ||||| ||||||||||| ||  || | ||||| || ||||||||||| ||||||||||| |||||||| ||  |||  || |||||||||||||||||  | |||| |     | |||| | |        |   | |     ||   || || || |   || |||||||||  | ||  ||
ATATTCAAAGATGGCTCCATTTCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCTGAGCCTACCCAAGATCCTGTAATCCAGgtccgttgttctc----tcttttcacacctgcaaattcaagcacaagtttggttttttttaactgaaaattctcatt--tcttacag

upper sequence: AT5G63960.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA04G38800.1 (Glycine max), 5'ss of exon 6
ATACTCAAAAATGGCTCCATTCCGTGTACTAAGTTTCGATATTGAGTGTGCAGGTCGTAAAGGACATTTTCCGGAAGCTAAGCATGATCCTGTAATCCAGgttagctgtttttgtcattttttgatatacctttttgttacctttgtttgcattcttcttgaaac-aacattctcattgcttttctag
||| ||||| |||||||| || ||  |  | ||||| || || |||||||| ||||||||||| |||||||| ||  |||  ||||||||||| ||||||||   ||||  |     |||| | |  | |   ||      |  ||||   ||| || |||||   || |||||| ||  | ||  ||
ATATTCAAAGATGGCTCCGTTTCGCATTTTGAGTTTTGACATCGAGTGTGCTGGTCGTAAAGGTCATTTTCCTGAGCCTACCCATGATCCTGTTATCCAGgtccactgtcctctc--ttttctcacctgcaaattcaagcacaatgtt---attgtttttgaactgaaaattctcttt--tcttacag