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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACTTCAATGCAAGAAAAACCGGGTGAAAATGTGGGCAAACTACGTCCCTCCAGCTAGCAACTCCAAGGCAATTCATGACCAGAATTTTACCGGAAAGgtaatatttgcttgcacacatttcttggtaaatatatttccttccgcacatttcaccagttcttagttcttactagtttgtactctcttcag

Basic information

species Arabidopsis thaliana
transcript AT5G61780.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G61780.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA08G00910.1 (Glycine max), 5'ss of exon 9
AGAACTTCAATGCAAGAAAAACCGGGTGAAAATGTGGGCAAACTACGTCCCTCCAGCTAGCAACTCCAAGGCAATTCATGACCAGAATTTTACCGGAAAGgtaatatttgcttgcacacatttcttggt---------aaatatatttccttccgcacatttcacc--agttcttagttctt-actagtttgtactctcttcag---------------------------------------------------------------------------------------------
||| |||||    ||||||||| || | || || ||| ||||||| || || ||||| |  || || |||||||| ||||||||||||||||| |||||||||| |||| ||   || ||||  ||  |         |||   || || |   | | | |   ||  ||   || ||| || || |      |     ||  |                                                                                             
AGAGCTTCAGGCAAAGAAAAACAGGTTAAAGATTTGGACAAACTATGTACCACCAGCAACAAATTCAAAGGCAATACATGACCAGAATTTTACAGGAAAGgtaaaattttctctaac-cattggtttatcccaaattaaaaaggatctcatggtgaataatatccctgaggatttggtttttgaccaaagccaatgacgttgtgtgatccacatatattgtagttgttgtattagtttatcccaaatattcaatcttcattcatttaagtctattttttggacttatctttttccag

upper sequence: AT5G61780.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA05G33320.1 (Glycine max), 5'ss of exon 9
AGAACTTCAATGCAAGAAAAACCGGGTGAAAATGTGGGCAAACTACGTCCCTCCAGCTAGCAACTCCAAGGCAATTCATGACCAGAATTTTACCGGAAAGgtaatatttgcttgcacacat------ttcttggtaaatatatttccttccgcacatttcaccagttcttagttcttactagtttgtactctcttcag----
||| |||||    ||||||||| || | || || ||| ||||||| || || || || |  || || |||||||| ||||||||||||||||| ||||||||||  ||| || | | |  |      | |    | || |    ||     |   ||   |  |   || ||   ||  |  |||  ||       ||    
AGAGCTTCAGGCTAAGAAAAACAGGTTAAAGATTTGGACAAACTATGTACCACCGGCAACAAATTCAAAGGCAATACATGACCAGAATTTTACAGGAAAGgtaaatttttctcgaaaaattggtttatcccaaattaaaagggatctcatggtgaataataatatccctgagaatttggt--ttttaaccaaacctagtgac

upper sequence: AT5G61780.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 8
AGAACTTCAATGCAAGAAAAACCGGGTGAAAATGTGGGCAAACTACGTCCCTCCAGCTAGCAACTCCAAGGCAATTCATGACCAGAATTTTACCGGAAAGgtaa-tatttgcttgcacacatttcttggtaaatatatttccttccgc---acatttcaccagttcttagttcttactagtttgtactctcttcag
 |||||||||   |||||| |  || | |  || ||| ||||||| || || |||||||  || || |||||||| ||||||||||||||||| ||||| |||| |  ||  |     | |||  |||  ||    || ||  |   |   | | || |  |||  |   |  ||||   | | | || ||| |||
TGAACTTCAAGCAAAGAAAGAGAGGCTAAGGATTTGGACAAACTATGTGCCCCCAGCTACAAATTCAAAGGCAATCCATGACCAGAATTTTACAGGAAAAgtaagtgctttttctgtgaaattatttgacaaggtcatctctgttaactaaatacttaaatagtcttctatctttacacatct-tcctgtctccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116396661|gb|EG439253.1|EG439253
EST:     CTCCAGCTAGCAACTCCAAGGCAATTCATGACCAGAATTTTACCGGAAAG                         GTAGTGGAAGTTGTGAGCGGGGACTGCTTAGTAGTTGCTGATGATTCTATC
genomic: CTCCAGCTAGCAACTCCAAGGCAATTCATGACCAGAATTTTACCGGAAAGgtaatatttg ... ctctcttcagGTAGTGGAAGTTGTGAGCGGGGACTGCTTAGTAGTTGCTGATGATTCTATC