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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctttgtttaaactctttatcacttatgtgttataagttatggaattgaaaagttttcttcatattaacagtttaaaccttttttttttcttgagcagGAGGTTGCTTTCAAAGTGGATTACAAAGTGGAAGCAATTGCCGGAAGAGAATTTGGCTCTGTTTACCTTGGTAACGAAAATCTTGCGAAGCTTGTTGTTC

Basic information

species Arabidopsis thaliana
transcript AT5G61780.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86069265|gb|DR365022.1|DR365022
EST:     CTTTTGCATGGGAAAGCAGGGAGTTTCTAAGGAAGCTTTGCATTGGAAAG                         GAGGTTGCTTTCAAAGTGGATTACCAAGTGG
genomic: CTTTTGCATGGGAAAGCAGGGAGTTTCTAAGGAAGCTTTGCATTGGAAAGgtgctttgtt ... tcttgagcagGAGGTTGCTTTCAAAGTGGATTACAAAGTGG
EST: gi|86069266|gb|DR365023.1|DR365023
EST:     CTTTTGCATGGGAAAGCAGGGAGTTTCTAAGGAAGCTTTGCATTGGAAAG                         GAGGTTGCTTTCAAAGTGGATTACAAAGNGGAAGCAATTGCCGGAAGAGAA
genomic: CTTTTGCATGGGAAAGCAGGGAGTTTCTAAGGAAGCTTTGCATTGGAAAGgtgctttgtt ... tcttgagcagGAGGTTGCTTTCAAAGTGGATTACAAAGTGGAAGCAATTGCCGGAAGAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgaaaagttttcttcatattaacagtttaaaccttttttttttcttgagcagGAGGTTGCTTTCAAAGTGGATTACAAAGTGGAAGCAATTGCCGGAAGAGAATTTGGCTCTGTTTACCTTGGTAACGAAAATCTTGCGAAGCTTGTTGTTC
                   tattaac  putative branch site (score: 1)
                            tttaaacctttttttt  putative PPT
                  atattaacagtttaaa  TA-rich tract