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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatttgcttgcacacatttcttggtaaatatatttccttccgcacatttcaccagttcttagttcttactagtttgtactctcttcagGTAGTGGAAGTTGTGAGCGGGGACTGCTTAGTAGTTGCTGATGATTCTATCCCATTCGGGAGCCCAATGGCGGAGCGCAGAGTTTGTCTTTCCAGTATCA

Basic information

species Arabidopsis thaliana
transcript AT5G61780.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116396661|gb|EG439253.1|EG439253
EST:     CTCCAGCTAGCAACTCCAAGGCAATTCATGACCAGAATTTTACCGGAAAG                         GTAGTGGAAGTTGTGAGCGGGGACTGCTTAGTAGTTGCTGATGATTCTATC
genomic: CTCCAGCTAGCAACTCCAAGGCAATTCATGACCAGAATTTTACCGGAAAGgtaatatttg ... ctctcttcagGTAGTGGAAGTTGTGAGCGGGGACTGCTTAGTAGTTGCTGATGATTCTATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccttccgcacatttcaccagttcttagttcttactagtttgtactctcttcagGTAGTGGAAGTTGTGAGCGGGGACTGCTTAGTAGTTGCTGATGATTCTATCCCATTCGGGAGCCCAATGGCGGAGCGCAGAGTTTGTCTTTCCAGTATCA
                             ttcttac  putative branch site (score: 2)
                                       tttgtactctcttc  putative PPT