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gtcagtgcttcgccttctcttcaactcctccaaaacttaagagttaagagtattgtctgaaacctgagagtgaaatgtgttgttatgatcacagGAAGGAATAGCCAGGATGGAGAAACGCAGGAGATGGGAACCGAAAGACAAGCAAGCCGCTCTTGATGCTCTTGAGAAGTTCCAAGACGAAGCTCGCAAAT
species | Arabidopsis thaliana |
transcript | AT5G61780.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CAATGCTTCAG GAAGGAATAGTCAGGATGGAGAAACGCAGGAGATGGGAACCGAAAGACAAGEST: gi|116404314|gb|EG446906.1|EG446906
genomic: CAATGCTTCAGgtcagtgctt ... atgatcacagGAAGGAATAGCCAGGATGGAGAAACGCAGGAGATGGGAACCGAAAGACAAG
EST: CTCTCATCGCTGTCGATGATGAGATCTCTGTCAATGCAGCAATGCTTCAG GAAGGAATAGCCCGGATGGAGAAACGCAGGAGATGGGAACCGAAAGACAAG
genomic: CTCTCATCGCTGTCGATGATGAGATCTCTGTCAATGCAGCAATGCTTCAGgtcagtgctt ... atgatcacagGAAGGAATAGCCAGGATGGAGAAACGCAGGAGATGGGAACCGAAAGACAAG
agagttaagagtattgtctgaaacctgagagtgaaatgtgttgttatgatcacagGAAGGAATAGCCAGGATGGAGAAACGCAGGAGATGGGAACCGAAAGACAAGCAAGCCGCTCTTGATGCTCTTGAGAAGTTCCAAGACGAAGCTCGCAAAT
ttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgcttcgccttctcttcaactcctccaaaacttaagagttaagagtattgtctgaaacctgagagtgaaatgtgttgttatgatcacagGAAGGAATAGCCAGGATGGAGAAACGCAGGAGATGGGAACCGAAAGACAAGCAAGCCGCTCTTGATGCTCTTGAGAAGTTCCAAGACGAAGCTCGCAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT