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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTCTTAAAGACGCTCCCATTATTGGATCGTTTAATCCTAAGAAGGGTGACATCGTCCTTGCACAATTTAGCCTCGATAACTCCTGGAACCGCGCAATGgtaaattataaagtttctaaatatgccaaccatgatttcttctttttttactatcacttatggttgtttattgtatttcgtatttgtgttaag

Basic information

species Arabidopsis thaliana
transcript AT5G61780.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G61780.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 15
GAGTCTTAAAGACGCTCCCATTATTGGATCGTTTAATCCTAAGAAGGGTGACATCGTCCTTGCACAATTTAGCCTCGATAACTCCTGGAACCGCGCAATGgtaaattataaagtttctaaatatgc---caaccatgatttcttctttttttactatcacttatggttgtttattgtatttcgtatttgtgttaag----
|| |||| |||| |||||  | |||||  | ||||||||||||||||||||||| |||||||| ||||||||    ||||| || |||||||| |||||||| |  | ||||  |    | | | |   |||     | || |   |  | || | || |     || | | |           || |||| |  |    
GAATCTTCAAGAAGCTCCTGTCATTGGTGCTTTTAATCCTAAGAAGGGTGACATTGTCCTTGCGCAATTTAGTGCAGATAATTCGTGGAACCGAGCAATGgtgagatttaaatctggatagtttactttcaagttccaattgtaaatactgtattttctcagcaagtgggtaaggaagagcgagatatgtgctttgaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86047622|gb|DR343377.1|DR343377
EST:     ACATCGTCCTTGCACAATTTAGCCTCGATAACTCCTGGAACCGCGCAATG                         ATTGTTAATGGACCTCGAGGAGCAGTTCAATCTCC
genomic: ACATCGTCCTTGCACAATTTAGCCTCGATAACTCCTGGAACCGCGCAATGgtaaattata ... ttgtgttaagATTGTTAATGGACCTCGAGGAGCAGTTCAATCTCC
EST: gi|86047626|gb|DR343381.1|DR343381
EST:     ACATCGTCCTTGCACAATTTAGCCTCGATAACTCCTGGAACCGCGCAATG                         ATTGTTAATGGACCTCGAGGAGCAGTTCAATCTCCAGAGGAGGA
genomic: ACATCGTCCTTGCACAATTTAGCCTCGATAACTCCTGGAACCGCGCAATGgtaaattata ... ttgtgttaagATTGTTAATGGACCTCGAGGAGCAGTTCAATCTCCAGAGGAGGA
EST: gi|86047625|gb|DR343380.1|DR343380
EST:     ACATCGTCCTTGCACAATTTAGCCTCGATAACTCCTGGAACCGCGCAATG                         ATTGTTAATGGACCTCGAGGAGCAGTTCA
genomic: ACATCGTCCTTGCACAATTTAGCCTCGATAACTCCTGGAACCGCGCAATGgtaaattata ... ttgtgttaagATTGTTAATGGACCTCGAGGAGCAGTTCA
EST: gi|86047623|gb|DR343378.1|DR343378
EST:     ACATCGTCCTTGCACAATTTAGCCTCGATAACTCCTGGAACCGCGCAATG                         ATTGTTAATGGACCTCGAGGAGCAGTTCAATCTCCAGAGGAGGAATTTGAA
genomic: ACATCGTCCTTGCACAATTTAGCCTCGATAACTCCTGGAACCGCGCAATGgtaaattata ... ttgtgttaagATTGTTAATGGACCTCGAGGAGCAGTTCAATCTCCAGAGGAGGAATTTGAA
EST: gi|164048103|gb|ES005715.1|ES005715
EST:     CCTGGAACCGCGCAATG                         ATTGTTAATGGACCTCGAGGAGCAGTTCAATCTCCAGAGGAGGAATT-GAA
genomic: CCTGGAACCGCGCAATGgtaaattata ... ttgtgttaagATTGTTAATGGACCTCGAGGAGCAGTTCAATCTCCAGAGGAGGAATTTGAA