1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtgaatttagccgtattattcgttctacaagtcattgaccggaatgtctcctttgtcttcgtctaaactaaaaccaaaacctcaattcactcttaattgcttaacacttcagGTTGTTGTTACGGAAGTACTTGGAGGCGGTCGTTTCTATGTTCAGACGGTTGGCGATCAAAAAGTAGCTTCGATTCAAAACCAGCTTGCAGCTCTGAGTC
species | Arabidopsis thaliana |
transcript | AT5G61780.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TAGTAAACGGTAGTTCTAAAGTAGAAACCAGGCAGAAGGAAACACTAAAG GTTGTTGTTACGGAAGTACTTGGAGGCGGTCGTTTCTATGTTCAGACGGTTEST: gi|86047627|gb|DR343382.1|DR343382
genomic: TAGTAAACGGTAGTTCTAAAGTAGAAACCAGGCAGAAGGAAACACTAAAGgtgaatttag ... aacacttcagGTTGTTGTTACGGAAGTACTTGGAGGCGGTCGTTTCTATGTTCAGACGGTT
EST: TAGTAAACGGTAGTTCTAAAGTAGAAACCAGGCAGAAGGAAACACTAAAG GTTGTTGTTACGGAAGTACTTGGAGGCGGTCGTTTCTATGTTCAGACGGTTEST: gi|86047622|gb|DR343377.1|DR343377
genomic: TAGTAAACGGTAGTTCTAAAGTAGAAACCAGGCAGAAGGAAACACTAAAGgtgaatttag ... aacacttcagGTTGTTGTTACGGAAGTACTTGGAGGCGGTCGTTTCTATGTTCAGACGGTT
EST: TAGTAAACGGTAGTTCTAAAGTAGAAACCAGGCAGAAGGAAACACTAAAG GTTGTTGTTACGGAAGTACTTGGAGGCGGTCGTTTCTATGTTCAGACGGTTEST: gi|86047626|gb|DR343381.1|DR343381
genomic: TAGTAAACGGTAGTTCTAAAGTAGAAACCAGGCAGAAGGAAACACTAAAGgtgaatttag ... aacacttcagGTTGTTGTTACGGAAGTACTTGGAGGCGGTCGTTTCTATGTTCAGACGGTT
EST: TAGTAAACGGTAGTTCTAAAGTAGAAACCAGGCAGAAGGAAACACTAAAG GTTGTTGTTACGGAAGTACTTGGAGGCGGTCGTTTCTATGTTCAGACGGTTEST: gi|86047625|gb|DR343380.1|DR343380
genomic: TAGTAAACGGTAGTTCTAAAGTAGAAACCAGGCAGAAGGAAACACTAAAGgtgaatttag ... aacacttcagGTTGTTGTTACGGAAGTACTTGGAGGCGGTCGTTTCTATGTTCAGACGGTT
EST: TAGTAAACGGTAGTTCTAAAGTAGAAACCAGGCAGAAGGAAACACTAAAG GTTGTTGTTACGGAAGTACTTGGAGGCGGTCGTTTCTATGTTCAGACGGTTEST: gi|86047623|gb|DR343378.1|DR343378
genomic: TAGTAAACGGTAGTTCTAAAGTAGAAACCAGGCAGAAGGAAACACTAAAGgtgaatttag ... aacacttcagGTTGTTGTTACGGAAGTACTTGGAGGCGGTCGTTTCTATGTTCAGACGGTT
EST: TAGTAAACGGTAGTTCTAAAGTAGAAACCAGGCAGAAGGAAACACTAAAG GTTGTTGTTACGGAAGTACTTGGAGGCGGTCGTTTCTATGTTCAGACGGTT
genomic: TAGTAAACGGTAGTTCTAAAGTAGAAACCAGGCAGAAGGAAACACTAAAGgtgaatttag ... aacacttcagGTTGTTGTTACGGAAGTACTTGGAGGCGGTCGTTTCTATGTTCAGACGGTT
ttcgtctaaactaaaaccaaaacctcaattcactcttaattgcttaacacttcagGTTGTTGTTACGGAAGTACTTGGAGGCGGTCGTTTCTATGTTCAGACGGTTGGCGATCAAAAAGTAGCTTCGATTCAAAACCAGCTTGCAGCTCTGAGTC
taaactaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatttagccgtattattcgttctacaagtcattgaccggaatgtctcctttgtcttcgtctaaactaaaaccaaaacctcaattcactcttaattgcttaacacttcagGTTGTTGTTACGGAAGTACTTGGAGGCGGTCGTTTCTATGTTCAGACGGTTGGCGATCAAAAAGTAGCTTCGATTCAAAACCAGCTTGCAGCTCTGAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC