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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAAGGGATATACGCCAAGGGATTGATCTAGCTACCACTCTTGAGCGCATAGAGAAGAATTTCGTCATCAGTGATCCTCGTCTCCCTGATAATCCCATTgtatgttttttctgtctaaaattgagatgaacgtttttttctcgaaccttaatgtatcaattgtagagtatatttcatatattgattgttcttactcaagtgttctactatgtttgtaagcatataatcttgaattgataatggaaatcgttttatttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G58140.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58140.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 5
AGAAAGGGATATACGCCAAGGGATTGATCTAGCTACCACTCTTGAGCGCATAGAGAAGAATTTCGTCATCAGTGATCCTCGTCTCCCTGATAATCCCATTgtatgttttttctgtctaaaattgagatgaacgtttttttctcgaaccttaatgtatcaattgtagagtatatttcatatattgattgttcttactcaagtgttctactatgtttgtaagcatataatcttgaattgataatggaaatcgttttatttgcag
||||||||||||||| ||||| |||||  |||| |||||||| |||||||| || |||||||| || || |  |||||  | || |||||||| || |||||| | ||   || |  |   ||           |||| | || |   ||  | |   |   || | | |       || | | | |      ||| ||  | |  | | || |||                                              
AGAAAGGGATATACGTCAAGGAATTGACTTAGCAACCACTCTAGAGCGCATTGAAAAGAATTTTGTGATAACCGATCCAAGACTTCCTGATAACCCAATTgtaagattaagcttttcatgtttct------ttattttctttctagttttggtatggtag--gtggggca-gcaatgtagaataaat------actaaaaagctaaatt-tggttg----------------------------------------------

upper sequence: AT5G58140.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: EFJ27458 (Selaginella moellendorffii), 5'ss of exon 6
AGAAAGGGATATACGCCAAGGGATTGATCTAGCTACCACTCTTGAGCGCATAGAGAAGAATTTCGTCATCAGTGATCCTCGTCTCCCTGATAATCCCATTgtatgttttttctgtctaaaattgagatgaacgtttttttctcgaaccttaatgtatcaattgtagagtatatttcatatattgattgttcttactcaagtgttctactatgtttgtaagcatataatcttgaattgataatggaaatcgttttatttgcag
 | |   || |||||  ||||| ||||||| || || |||||||| || || ||||||||||||||||| | |||||| ||  | || || || || || ||| |  |        | | ||  |  | || |||||| | |  |                                                                                                                     
TGCAGAAGAAATACGTAAAGGGTTTGATCTGGCAACAACTCTTGAACGTATCGAGAAGAATTTCGTCATTACTGATCCACGCTTGCCAGACAACCCAATCgtaagcatgagagaaatgacatgcatgttaaggtttttctgtttag--------------------------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125110153|gb|EL162253.1|EL162253
EST:     AGAGAAGAATTTCGTCATCAGTGATCCTCGTCTCCCTGATAATACCCATT                         ATCTTTGCATCAGACAGC
genomic: AGAGAAGAATTTCGTCATCAGTGATCCTCGTCTCCCTGATAAT-CCCATTgtatgttttt ... ttatttgcagATCTTTGCATCAGACAGC
EST: gi|125277439|gb|EL291524.1|EL291524
EST:     AGTGATCCTCGTCTCCCTGATAATCCCATT                         ATCTTTGCATCAGACAGCTTTCTTGAATTGACAGAGTATTCAC
genomic: AGTGATCCTCGTCTCCCTGATAATCCCATTgtatgttttt ... ttatttgcagATCTTTGCATCAGACAGCTTTCTTGAATTGACAGAGTATTCAC