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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGATGCTTTATGGTCGCACACCTTTCAGGGGTAAGAATAGGCAAAAGACATTTGCCAACATCTTGCACAAAGATCTCACTTTCCCCAGCAGTATCCCTgtgagctaccttgtaacaacaacctgtgtgtctttcccaaagtaaaaaaaatactaatctaaccatatgtgtttgtgcag

Basic information

species Arabidopsis thaliana
transcript AT5G58140.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58140.3 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 20
TGAGATGCTTTATGGTCGCACACCTTTCAGGGGTAAGAATAGGCAAAAGACATTTGCCAACATCTTGCACAAAGATCTCACTTTCCCCAGCAGTATCCCTgtgagct----accttgtaaca-acaacctgtgtgtc----tttcccaaagtaaaaaaaatactaatctaaccatatgtgtttgtgcag------------
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TGAGATGCTTTATGGCCGTACTCCTTTCAGAGGAAAGAATAGGCAGAAGACATTTTCCAACATCTTGCACAAAGATCTGACTTTTCCCAGTAGCATTCCGgtaaaatcatcactttctaatgcattaccactgtcttaagataatttctctttgatcattcacttatgtacttaaaagtgtt-gagcagtacagcagagga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125195255|gb|EL210209.1|EL210209
EST:     CACTTTCCCCAGCAGTATCCCT                         GTGAGTCTTGTAGGTAGACAGTTGATCAACACGTTGTTAAATAGAGATCCG
genomic: CACTTTCCCCAGCAGTATCCCTgtgagctacc ... gtttgtgcagGTGAGTCTTGTAGGTAGACAGTTGATCAACACGTTGTTAAATAGAGATCCG
EST: gi|124793285|gb|EH882964.1|EH882964
EST:     CAAAGATCTCACTTTCCCCAGCAGTATCCCT                         GTGAGTCTTGTAGGTAGACAGTTGATCAACACGTTGTTAAATAGAGATCCG
genomic: CAAAGATCTCACTTTCCCCAGCAGTATCCCTgtgagctacc ... gtttgtgcagGTGAGTCTTGTAGGTAGACAGTTGATCAACACGTTGTTAAATAGAGATCCG