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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctgtttttttgcatctcttcgttaattcaacaagttttttttagccaaaaacaatgatataatttagcaaagagtgctgatccacaatctttaacatgtaatggttttgatgatgatatcagCTCGCCAGAAGGAGAAAGCTTTGGATTCCATCACAGAGGTTGTGCAAACTATAAGACATCGTAAGTCTCAAGTTCAGGAATCCGTGAGCAATGACACTAT

Basic information

species Arabidopsis thaliana
transcript AT5G58140.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58140.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA08G33560.1 (Glycine max), 3'ss of exon 3
gtatctgtttttttgcatctcttcgttaattcaacaagttttttttagccaaaaacaatgatataatttagcaaagagtgctgatccacaatctttaacatgtaatggttttgatgatgatatcagCTCGCCAGAAGGAGAAAGCTTTGGATTCCATCACAGAGGTTGTGCAAACTATAAGACATCGTAAGTCTCAAGTTCAGGAATCCGTGAGCAATGACACTAT
                                               |  | |      |  ||  ||||| |  | |||    ||  ||    || |||| ||||  |||   |     || ||||||| || |||||||||||||||| ||||||||| |||||||| |||||| | |   | |  || ||     || | ||        |  ||    ||| 
-----------------------------------------------gtaatatgttgagccatt-tttagtagtgtgtgagattctgca----tttacatataatcatttaatttcatttaccagCTCGTCAAAAGGAGAAAGCTTTGGGTTCCATCACTGAGGTTGTCCAAACTGTTAAGGACCCAAAATCCATTATTAATGATAGGAATGGTGATACTGCTAC

upper sequence: AT5G58140.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA16G19560.1 (Glycine max), 3'ss of exon 4
gtatctgtttttttgcatctcttcgttaattcaacaagttttttttagccaaaaacaatgatataatttagcaaagagtgctgatccacaatctttaacatgtaatggttttg-atgatgatatcagCTCGCCAGAAGGAGAAAGCTTTGGATTCCATCACAGAGGTTGTGCAAACTATAAGACATCGTAAGTCTCAAGTTCAGGAATCCGTGAGCAATGACACTAT
                                                                                                     |||||  |||   || ||  || ||||||| || |||||||||||||||| ||| ||||| |||||||| |||||  | | | | |  || ||     || | ||       || ||||       
-----------------------------------------------------------------------------------------------------gtaatcatttaatatcatt-taccagctcgtcaaaaggagaaagctttgggttctatcactgaggttgtccaaaccgttaaagACCCAAAATCAATTATTAATGAT------AGGAATG-------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaagagtgctgatccacaatctttaacatgtaatggttttgatgatgatatcagCTCGCCAGAAGGAGAAAGCTTTGGATTCCATCACAGAGGTTGTGCAAACTATAAGACATCGTAAGTCTCAAGTTCAGGAATCCGTGAGCAATGACACTAT
                  aatctttaa  TA-rich tract