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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACGCACGTCTGTTTGATTACAGACTTCTGCCCAGGTGGAGAGTTGTTTGCACTACTTGACAGACAACCTATGAAAATATTGACAGAAGACTCTGCAAGgttccctcttttcctcaatctaaacgtataatgtgtaacagaagatctcctggtgatgttttaactaaataggggcactatgttagcaagaaaacatatc...

Basic information

species Arabidopsis thaliana
transcript AT5G58140.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58140.3 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA16G19560.1 (Glycine max), 5'ss of exon 17
CTACGCACGTCTGTTTGATTACAGACTTCTGCCCAGGTGGAGAGTTGTTTGCACTACTTGACAGACAACCTATGAAAATATTGACAGAAGACTCTGCAAGgttccctcttttcctcaatctaaacgtataa-tgtgtaacagaagatctcctggtgatgttttaactaaataggggcactatgttagcaagaaaacatatc
|||| || || ||||||||||| |||||||  || || ||||||||||||||| | |||||||  ||||| ||||| || || | |||||| || || |||| |  |   || | || | |   ||   || | | |        ||       ||| ||||| | ||  || |   |  ||    |   | ||   | | 
CTACACATGTATGTTTGATTACTGACTTCTTTCCTGGAGGAGAGTTGTTTGCATTGCTTGACAAGCAACCAATGAAGATTTTCAAAGAAGAATCAGCGAGgtactattgatttcccatttttctcggccaactttcttgggccgtattattacttgaagttttcaatatttatgtagatgattcctgtctgcaatattgt-

upper sequence: AT5G58140.3 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 15
CTACGCACGTCTGTTTGATTACAGACTTCTGCCCAGGTGGAGAGTTGTTTGCACTACTTGACAGACAACCTATGAAAATATTGACAGAAGACTCTGCAAGgttccctcttttcctcaatcta-aacgtata----atgtgtaacagaagatctcctggtgatgtt---ttaactaaataggggcactatgttagcaagaaaacatatc
|||| ||||| |||||||| |||||||| | ||| ||||||||||| ||||| || |||||||  ||||| ||||||||||| | ||| || |||||||||| |    | ||     || || |  || ||    |    |  ||  | | || ||||  || ||   ||| | |||         |||  | ||   ||        
CTACACACGTTTGTTTGATAACAGACTTTTTCCCTGGTGGAGAGTTATTTGCCCTGCTTGACAAGCAACCCATGAAAATATTTAGAGAGGAATCTGCAAGgtacatgttcttataacatttacagtgtctatgacactctttgcattataactactggaaattttcgattatccaaaattttctcttatagttgctgtaa--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124819315|gb|EH904181.1|EH904181
EST:     TATTGACAGAAGACTCTGCAAG                         GTTCTATGCAGCAGAGGTTGTTATCGGCTTAGAATATCTTCACTGCTTAG
genomic: TATTGACAGAAGACTCTGCAAGgttccctctt ... ctgtcatcagGTTCTATGCAGCAGAGGTTGTTATCGGCTTAGAATATCTTCACTGCTTAG