Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcagttagcggttactcggataactgatgaaggcaataaatcccattgtcattattatatctgcagttatgagttaatctgatcaatctctgtcatcagGTTCTATGCAGCAGAGGTTGTTATCGGCTTAGAATATCTTCACTGCTTAG

Basic information

species Arabidopsis thaliana
transcript AT5G58140.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58140.3 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 3'ss of exon 15
---ttcagttagcggttactcggataactgatgaaggcaataaatcccattg-tcattattatatctgcagttatgagttaatctgatcaatctctgtcatcagGTTCTATGCAGCAGAGGTTGTTATCGGCTTAGAATATCTTCACTGCTTAG
    ||| ||   || |  | || || || || |     |||  || ||  | ||||| ||  |        | |  |         |   |     ||  |||||||||||| |||||||| || || ||||| |||||||||||||| ||||
catctcattt--tggctgatagggta-cttatcatcaagatat-tcacacagctcattttttcacactttactgtttgaatgctcacttttttcacatccccagGTTCTATGCTGCAGAGGTCGTGATTGGCTTGGAATATCTTCACTGTTTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124819315|gb|EH904181.1|EH904181
EST:     TATTGACAGAAGACTCTGCAAG                         GTTCTATGCAGCAGAGGTTGTTATCGGCTTAGAATATCTTCACTGCTTAG
genomic: TATTGACAGAAGACTCTGCAAGgttccctctt ... ctgtcatcagGTTCTATGCAGCAGAGGTTGTTATCGGCTTAGAATATCTTCACTGCTTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtcattattatatctgcagttatgagttaatctgatcaatctctgtcatcagGTTCTATGCAGCAGAGGTTGTTATCGGCTTAGAATATCTTCACTGCTTAG
                                atctgat  putative branch site (score: 4)
                                          tctctgtc  putative PPT
      attattatatct  TA-rich tract