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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataataatcattgtctctgttgatctaaacattgcttatttatacattgccacatgccttgagtagtctcttcttccaataattttttagctgttgtttcggttaaagatctgtatatattttccataaacagGAATTGTATATCGAGACCTGAAGCCTGAGAATATACTGCTCAAGAAGGATGGACACATAGTATTGGCTGACTTTGATTTATCATTCATGACGACCTGCAC

Basic information

species Arabidopsis thaliana
transcript AT5G58140.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124819315|gb|EH904181.1|EH904181
EST:     GTTCTATGCAGCAGAGGTTGTTATCGGCTTAGAATATCTTCACTGCTTAG                         GAATTGTATATCGAGA
genomic: GTTCTATGCAGCAGAGGTTGTTATCGGCTTAGAATATCTTCACTGCTTAGgtaataataa ... ccataaacagGAATTGTATATCGAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataattttttagctgttgtttcggttaaagatctgtatatattttccataaacagGAATTGTATATCGAGACCTGAAGCCTGAGAATATACTGCTCAAGAAGGATGGACACATAGTATTGGCTGACTTTGATTTATCATTCATGACGACCTGCAC
                                       tattttcc  CT-rich tract
                        ttaaagatctgtatat  TA-rich tract