Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatttcttcgcacgccttgacatatatttagaactatttccgagcttcttaactttcttatttgtttttcttgctagACCTTTTGCCGTAAGGCTACATTCCTTAATGCCTCTGGACAATTTACTTTCATG

Basic information

species Arabidopsis thaliana
transcript AT5G42470.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124779113|gb|EH869056.1|EH869056
EST:     TTATTGAGGCATTAAGTCTTAATCTGGGAAGACCTCTTGAAGCCGATCCT                         ACCTTTTGCCGTAAGGCTACATTCCTTAATGCCTCTGGACAATTTA
genomic: TTATTGAGGCATTAAGTCTTAATCTGGGAAGACCTCTTGAAGCCGATCCTgtaagcattt ... ttcttgctagACCTTTTGCCGTAAGGCTACATTCCTTAATGCCTCTGGACAATTTA
EST: gi|124877654|gb|EH957091.1|EH957091
EST:     CTTGAAGCCGATCCT                         ACCTTTTGCCGTAAGGCTACATTCCTTAATGCCTCTGGACAATTTACTTTC
genomic: CTTGAAGCCGATCCTgtaagcattt ... ttcttgctagACCTTTTGCCGTAAGGCTACATTCCTTAATGCCTCTGGACAATTTACTTTC
EST: gi|163990342|gb|ES103094.1|ES103094
EST:     GTCTTAATCTGGGAAGACCTCTTGAAGCCGATCCT                         ACCTTTTGCCGTAAGGCTACATTCCTTAATGCCTCTGGACAATTTACTTTC
genomic: GTCTTAATCTGGGAAGACCTCTTGAAGCCGATCCTgtaagcattt ... ttcttgctagACCTTTTGCCGTAAGGCTACATTCCTTAATGCCTCTGGACAATTTACTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatttagaactatttccgagcttcttaactttcttatttgtttttcttgctagACCTTTTGCCGTAAGGCTACATTCCTTAATGCCTCTGGACAATTTACTTTCATG
                        tcttaac  putative branch site (score: 2)
                      cttcttaactttctta  CT-rich tract
                          ttaactttcttatttg  TA-rich tract