1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagtgtttcttcgagtaattacgctacgatgttgtcgaagcggatcgttgatttcgtcgtgttcttatggttgcagGGGATGTTATTTACAATTCAGAGTATGCAATGGATCCTCCAGATTTCGTATTTGGACCAGACGACGAAGATTTTGTGCCGTGTAAGTGTAGCGCTATTGC
species | Arabidopsis thaliana |
transcript | AT5G42470.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTCGATCGCTTTACTCTCGTGATACCTTACTGTCTAGAGACAATCAAAT GGGATGTTATTTACAATTCAGAGTATGCAATGGATCCTCCAGATTTCGTATEST: gi|125215956|gb|EL230039.1|EL230039
genomic: TCTCGATCGCTTTACTCTCGTGATACCTTACTGTCTAGAGACAATCAAATgtaagtgttt ... atggttgcagGGGATGTTATTTACAATTCAGAGTATGCAATGGATCCTCCAGATTTCGTAT
EST: ATACCTTACTGTCTAGAGACAATCAAAT GGGATGTTATTTACAATTCAGAGTATGCAATGGATCCTCCAGATTTCGTATEST: gi|86066520|gb|DR362277.1|DR362277
genomic: ATACCTTACTGTCTAGAGACAATCAAATgtaagtgttt ... atggttgcagGGGATGTTATTTACAATTCAGAGTATGCAATGGATCCTCCAGATTTCGTAT
EST: TCTCGATCGCTTTACTCTCGTGATACCTTACTGTCTAGAGACAATCAAAT GGGATGTTATTTACAATTCAGAGTATGCAATGGATCCTCCAGATTTCGTAT
genomic: TCTCGATCGCTTTACTCTCGTGATACCTTACTGTCTAGAGACAATCAAATgtaagtgttt ... atggttgcagGGGATGTTATTTACAATTCAGAGTATGCAATGGATCCTCCAGATTTCGTAT
cgctacgatgttgtcgaagcggatcgttgatttcgtcgtgttcttatggttgcagGGGATGTTATTTACAATTCAGAGTATGCAATGGATCCTCCAGATTTCGTATTTGGACCAGACGACGAAGATTTTGTGCCGTGTAAGTGTAGCGCTATTGC
cgttgat putative branch site (score: 5)
ttcttat putative PPT
ttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtttcttcgagtaattacgctacgatgttgtcgaagcggatcgttgatttcgtcgtgttcttatggttgcagGGGATGTTATTTACAATTCAGAGTATGCAATGGATCCTCCAGATTTCGTATTTGGACCAGACGACGAAGATTTTGTGCCGTGTAAGTGTAGCGCTATTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA