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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTTTTGCCGTAAGGCTACATTCCTTAATGCCTCTGGACAATTTACTTTCATGgtaattattctatcactattcaagccttgtttaaaaagttctattcaatctttgccaaagtggattttcatacttgtcttctagagaaatctcaatttcacaaaaatatgtagcagtggattattgggtttttggctttgctgtag

Basic information

species Arabidopsis thaliana
transcript AT5G42470.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124877654|gb|EH957091.1|EH957091
EST:     TTTGCCGTAAGGCTACATTCCTTAATGCCTCTGGACAATTTACTTTCATG                         GTTCATTTCTTCTTTTCAACTCAATTTCCGAAGCAGCAACCAACT
genomic: TTTGCCGTAAGGCTACATTCCTTAATGCCTCTGGACAATTTACTTTCATGgtaattattc ... tttgctgtagGTTCATTTCTTCTTTTCAACTCAATTTCCGAAGCAGCAACCAACT
EST: gi|164107783|gb|ES083705.1|ES083705
EST:     ACAATTTACTTTCATG                         GTTCATTTCTTCTTTTCAACTCAATTTCCGAAGCAGCAACCAACTCTGATG
genomic: ACAATTTACTTTCATGgtaattattc ... tttgctgtagGTTCATTTCTTCTTTTCAACTCAATTTCCGAAGCAGCAACCAACTCTGATG
EST: gi|163990342|gb|ES103094.1|ES103094
EST:     TTTGCCGTAAGGCTACATTCCTTAATGCCTCTGGACAATTTACTTTCATG                         GTTCATTTCTTCTTTTCAACTCAAT
genomic: TTTGCCGTAAGGCTACATTCCTTAATGCCTCTGGACAATTTACTTTCATGgtaattattc ... tttgctgtagGTTCATTTCTTCTTTTCAACTCAAT