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gtaagttagttacagatgtacacacagttcactatacctgcaaaccatacatgtattaatcagtaatacttacatttctatttcaaagGTGCTTGGCTGAATATCTTCCCCATCTTGAAGAAACACTTGAGAGACAG
species | Arabidopsis thaliana |
transcript | AT5G42470.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCGCTATTCTCTGTTGAGGATGTTAAACTTTCTCCATGGATGGACGGGAT GTGCTTGGCTGAATATCTTCCCCATCTTGAAGAAACACEST: gi|124972638|gb|EL046320.1|EL046320
genomic: TCGCTATTCTCTGTTGAGGATGTTAAACTTTCTCCATGGATGGACGGGATgtaagttagt ... tatttcaaagGTGCTTGGCTGAATATCTTCCCCATCTTGAAGAAACAC
EST: ATGTTAAACTTTCTCCATGGATGGACGGGAT GTGCTTGGCTGAATATCTTCCCCATCTTGAAGAAACACTTGAGAGACAGEST: gi|164151068|gb|ES174844.1|ES174844
genomic: ATGTTAAACTTTCTCCATGGATGGACGGGATgtaagttagt ... tatttcaaagGTGCTTGGCTGAATATCTTCCCCATCTTGAAGAAACACTTGAGAGACAG
EST: CGCTATTCTCTGTTGAGGATGTTAAACTTTCTCCATGGATGGACGGGGAT GTGCTTGGCTGAATATCTTCCCCATCTTGAAGAAACAC
genomic: CGCTATTCTCTGTTGAGGATGTTAAACTTTCTCCATGGATGGACGGG-ATgtaagttagt ... tatttcaaagGTGCTTGGCTGAATATCTTCCCCATCTTGAAGAAACAC
atacctgcaaaccatacatgtattaatcagtaatacttacatttctatttcaaagGTGCTTGGCTGAATATCTTCCCCATCTTGAAGAAACACTTGAGAGACAG
tacttac putative branch site (score: 1)
tttctatttc CT-rich tract
tattaatcagtaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttagttacagatgtacacacagttcactatacctgcaaaccatacatgtattaatcagtaatacttacatttctatttcaaagGTGCTTGGCTGAATATCTTCCCCATCTTGAAGAAACACTTGAGAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA