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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttctcttcgttcttataattttatccttttcttcactctgttaaaattgctggcatcttcttgagaaacttgttgcggatccagGTAGTATACCCGATTCTTCGGAAATATGAAGCAGCACCGTCAGCACCTCGTTTGAAATTAGTATCATATTATGATTTAAAATCGCTATTCTCTGTTGAGG

Basic information

species Arabidopsis thaliana
transcript AT5G42470.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124930779|gb|EL008197.1|EL008197
EST:     GAAGATTTATCTTCAG                         GTAGTATACCCGATTCTTCGGAAATATGAAGCAGCACCGTCAGCACCTCGT
genomic: GAAGATTTATCTTCAGgttttctctt ... gcggatccagGTAGTATACCCGATTCTTCGGAAATATGAAGCAGCACCGTCAGCACCTCGT
EST: gi|125273889|gb|EL287974.1|EL287974
EST:     AAATGGTGGTTGGCTGCCCTTGGAAGCATCAGCAGAAGATTTATCTTCAG                         GTAGTATACCCGATTCTTCGGAAATA
genomic: AAATGGTGGTTGGCTGCCCTTGGAAGCATCAGCAGAAGATTTATCTTCAGgttttctctt ... gcggatccagGTAGTATACCCGATTCTTCGGAAATA
EST: gi|125184016|gb|EL198970.1|EL198970
EST:     AAATGGTGGTTGGCTGCCCTTGGAAGCATCAGCAGAAGATTTATCTTCAG                         GTAGTATACCCGATTCTTCGGAAATATG
genomic: AAATGGTGGTTGGCTGCCCTTGGAAGCATCAGCAGAAGATTTATCTTCAGgttttctctt ... gcggatccagGTAGTATACCCGATTCTTCGGAAATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcactctgttaaaattgctggcatcttcttgagaaacttgttgcggatccagGTAGTATACCCGATTCTTCGGAAATATGAAGCAGCACCGTCAGCACCTCGTTTGAAATTAGTATCATATTATGATTTAAAATCGCTATTCTCTGTTGAGG
         tgttaaaatt  TA-rich tract