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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaataacatccccaatttcacgatattcaagtcttctttggattttgcttatccttcagaaaattaggttttctaagcttaagaatctgatttttttctttatagATCGCAAACGTGTGGTCTGGTAACAAAATTAATCCCAAGATTCTCGATCGCTTTACTCTCGTGATACCTTACTGTCTAGAGACAATCAAAT

Basic information

species Arabidopsis thaliana
transcript AT5G42470.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86066522|gb|DR362279.1|DR362279
EST:     TCGCCGACCAGCTCCACTACTTACTCAATCACTCACCTGATTCCATCAAG                         ATCGCAAACGTGTGGTCTGGTAACAAAATTAATCCCAAGATTCTCGATCGC
genomic: TCGCCGACCAGCTCCACTACTTACTCAATCACTCACCTGATTCCATCAAGgtaacaataa ... ttctttatagATCGCAAACGTGTGGTCTGGTAACAAAATTAATCCCAAGATTCTCGATCGC
EST: gi|86066520|gb|DR362277.1|DR362277
EST:     TCGCCGACCAGCTCCACTACTTACTCAATCACTCACCTGATTCCATCAAG                         ATCGCAAACGTGTGGTCTGGTAACAAAATTAATCCCAAGATTCTCGATCGC
genomic: TCGCCGACCAGCTCCACTACTTACTCAATCACTCACCTGATTCCATCAAGgtaacaataa ... ttctttatagATCGCAAACGTGTGGTCTGGTAACAAAATTAATCCCAAGATTCTCGATCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccttcagaaaattaggttttctaagcttaagaatctgatttttttctttatagATCGCAAACGTGTGGTCTGGTAACAAAATTAATCCCAAGATTCTCGATCGCTTTACTCTCGTGATACCTTACTGTCTAGAGACAATCAAAT
                                  atctgat  putative branch site (score: 4)
                                   tctgatttttttcttt  CT-rich tract
                                 aatctgatttttttct  TA-rich tract