1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGAGTTTGCTGGCCGTTCTGTTTCCCATAAATTCGAAGATTTGAGGGCAAAGCTTAAGCAAGAGGGTGCTCGTGGTTTGGTCATCGCTGCTCTTGATGAGgtgtgttttcgtagtaaaaagatctctctttttctcagttcagctttggaatgtattttgattgggggtttgatgcag
species | Arabidopsis thaliana |
transcript | AT4G36760.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCTTAAGCAAGAGGGTGCTCGTGGTTTGGTCATCGCTGCTCTTGATGAG GTTGCTTGGCTATATAATATCCGTGGAACTGATGTTGCTTATTGTCCCGTTEST: gi|116409976|gb|EG452568.1|EG452568
genomic: AGCTTAAGCAAGAGGGTGCTCGTGGTTTGGTCATCGCTGCTCTTGATGAGgtgtgttttc ... tttgatgcagGTTGCTTGGCTATATAATATCCGTGGAACTGATGTTGCTTATTGTCCCGTT
EST: AGCTTAAGCAAGAGGGTGCTCGTGGTTTGGTCATCGCTGCTCTTGATGAG GTTGCTTGGCTATATAATATCCGTGGAACTGATGTTGCTTATTGTCCCGTT
genomic: AGCTTAAGCAAGAGGGTGCTCGTGGTTTGGTCATCGCTGCTCTTGATGAGgtgtgttttc ... tttgatgcagGTTGCTTGGCTATATAATATCCGTGGAACTGATGTTGCTTATTGTCCCGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGTTTGCTGGCCGTTCTGTTTCCCATAAATTCGAAGATTTGAGGGCAAAGCTTAAGCAAGAGGGTGCTCGTGGTTTGGTCATCGCTGCTCTTGATGAGgtgtgttttcgtagtaaaaagatctctctttttctcagttcagctttggaatgtattttgattgggggtttgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT