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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttactcgttgtctgttaactaataccgtagttctcatatcaacatgcacatctgagtaactctcgatctctctctctctccagGCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGGAAGAGATTGACTGGTTAAACACATATCATTCGAAGTGCAAAGACATCTTAGCCC

Basic information

species Arabidopsis thaliana
transcript AT4G36760.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116468011|gb|EG510603.1|EG510603
EST:     AATTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGG                         GCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGGAAGAG
genomic: AATTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGGgtacttactc ... ctctctccagGCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGGAAGAG
EST: gi|116468010|gb|EG510602.1|EG510602
EST:     AATTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGG                         GCACCATATCAAGTGAAACTTATCGATTTAGACGAGTTGACACGGGAAGAG
genomic: AATTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGGgtacttactc ... ctctctccagGCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGGAAGAG
EST: gi|86087805|gb|DR383564.1|DR383564
EST:     AATTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGG                         GCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGGAAGAG
genomic: AATTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGGgtacttactc ... ctctctccagGCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGGAAGAG
EST: gi|125065058|gb|EL132439.1|EL132439
EST:     AGTTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGG                         GCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGG
genomic: AATTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGGgtacttactc ... ctctctccagGCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGG
EST: gi|86064645|gb|DR360402.1|DR360402
EST:     AATTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGG                         GCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGGAAGAG
genomic: AATTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGGgtacttactc ... ctctctccagGCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGGAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttctcatatcaacatgcacatctgagtaactctcgatctctctctctctccagGCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGGAAGAGATTGACTGGTTAAACACATATCATTCGAAGTGCAAAGACATCTTAGCCC
                         gagtaac  putative branch site (score: 2)
                               ctctcgatctctctct  CT-rich tract
       atatcaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacttactcgttgtctgttaactaataccgtagttctcatatcaacatgcacatctgagtaactctcgatctctctctctctccagGCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGGAAGAGATTGACTGGTTAAACACATATCATTCGAAGTGCAAAGACATCTTAGCCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG