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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttttcgtagtaaaaagatctctctttttctcagttcagctttggaatgtattttgattgggggtttgatgcagGTTGCTTGGCTATATAATATCCGTGGAACTGATGTTGCTTATTGTCCCGTTGTTCATGCGTTTGCAATCCTTACCACCGACTCTGCGTTTCTCTATGTTG

Basic information

species Arabidopsis thaliana
transcript AT4G36760.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G36760.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA01G38410.4 (Glycine max), 3'ss of exon 4
---------------------------------------------------------------------gtgtgttttc-gtagtaaaaagatctctctttt-------tctcagttcagctttggaatgtattttgat--tgggggtttgatgcagGTTGCTTGGCTATATAATATCCGTGGAACTGATGTTGCTTATTGTCCCGTTGTTCATGCGTTTGCAATCCTTACCACCGACTCTGCGTTTCTCTATGTTG
                                                                     |  | ||||| |  | |        ||  ||||       | |   ||    |||  | | | |||  ||  || || |   || |||||||| ||| | |||||||| ||||||| |||||| || || ||||| ||||||||||| ||||| ||  | ||  || | ||||| ||  | ||||| |
gtaagtgcatcctctagataactcttccttttaacttcttttcccttgacacaaattttctgagtttgaggatattttctgctgcacttgttcatcctttttaagataattttctttattttttccactttttttcaataatgtggctacaatacagGTTGCATGGTTGTATAATATTCGTGGAAGTGATGTGGCCTACTGTCCTGTTGTTCATGCATTTGCTATTGTGACATCCAATTCTGCTTTCATTTATGTGG

upper sequence: AT4G36760.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA11G06900.1 (Glycine max), 3'ss of exon 4
-----------------------------------------------------------------------------------gtgtgttttcgtagtaaaaagatctctct---ttttctcagttcagctttggaatgtattttgattgggggtttgatgcagGTTGCTTGGCTATATAATATCCGTGGAACTGATGTTGCTTATTGTCCCGTTGTTCATGCGTTTGCAATCCTTACCACCGACTCTGCGTTTCTCTATGTTG
                                                                                   |    | ||| |  | || | | || |||   |||| ||| ||||  |        ||   ||| |         || |||||||| ||| | |||||||| ||||||| |||||| || || ||||| ||||||||||| ||||| ||  | ||  || | ||||| ||  | ||||| |
gtaagatcatcctctctataactcttccttttaatttcttttcccttgacacaaattttctgagtttgaggctactttctgccgcccttgttcatttttaagatagctttctttattttttcacttcatttccaa----taacctgacta------caatacagGTTGCATGGTTGTATAATATTCGTGGAAGTGATGTGGCCTACTGTCCTGTTGTTCATGCATTTGCTATTGTGACATCCAATTCTGCTTTCATTTATGTGG

upper sequence: AT4G36760.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv04s0023g01300.t01 (Vitis vinifera), 3'ss of exon 4
------------------------------------------------------------gtgtgttttcgtagtaaaaagatctctctttttctcagttcagctttggaatgtattttgattgggggtttgatgcagGTTGCTTGGCTATATAATATCCGTGGAACTGATGTTGCTTATTGTCCCGTTGTTCATGCGTTTGCAATCCTTACCACCGACTCTGCGTTTCTCTATGTTG
                                                             |   || ||   |       |  |    ||| |||| ||   | |   ||  ||  |  | |    |||  | ||||||||||||| |||||||| | ||||| ||||||||  |||| ||||| ||||||||||| ||||| ||  | ||  || | || || ||  | |||||||
gtaagttcatcttgttcttgcttaatatttgcaattctgttgtttcgagattgagaatctattgattctcagggaccttccagtttaaatttcctcattttctcatgcaaaattaagtgtaataactgtt--acgcagGTTGCTTGGTTATATAATGTTCGTGGGACTGATGTGTCTTACTGTCCAGTTGTTCATGCATTTGCTATAGTGACATCCAAATCAGCTTTCTTTTATGTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116482889|gb|EG525481.1|EG525481
EST:     AGCTTAAGCAAGAGGGTGCTCGTGGTTTGGTCATCGCTGCTCTTGATGAG                         GTTGCTTGGCTATATAATATCCGTGGAACTGATGTTGCTTATTGTCCCGTT
genomic: AGCTTAAGCAAGAGGGTGCTCGTGGTTTGGTCATCGCTGCTCTTGATGAGgtgtgttttc ... tttgatgcagGTTGCTTGGCTATATAATATCCGTGGAACTGATGTTGCTTATTGTCCCGTT
EST: gi|116409976|gb|EG452568.1|EG452568
EST:     AGCTTAAGCAAGAGGGTGCTCGTGGTTTGGTCATCGCTGCTCTTGATGAG                         GTTGCTTGGCTATATAATATCCGTGGAACTGATGTTGCTTATTGTCCCGTT
genomic: AGCTTAAGCAAGAGGGTGCTCGTGGTTTGGTCATCGCTGCTCTTGATGAGgtgtgttttc ... tttgatgcagGTTGCTTGGCTATATAATATCCGTGGAACTGATGTTGCTTATTGTCCCGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctctttttctcagttcagctttggaatgtattttgattgggggtttgatgcagGTTGCTTGGCTATATAATATCCGTGGAACTGATGTTGCTTATTGTCCCGTTGTTCATGCGTTTGCAATCCTTACCACCGACTCTGCGTTTCTCTATGTTG
                          aatgtattttgatt  TA-rich tract