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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGGTATTAGGTTGGAGAATGTTCTTGTTGTCAATGACGCTGAGACTGAATTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGGgtacttactcgttgtctgttaactaataccgtagttctcatatcaacatgcacatctgagtaactctcgatctctctctctctccag

Basic information

species Arabidopsis thaliana
transcript AT4G36760.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116468011|gb|EG510603.1|EG510603
EST:     AATTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGG                         GCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGGAAGAG
genomic: AATTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGGgtacttactc ... ctctctccagGCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGGAAGAG
EST: gi|116468010|gb|EG510602.1|EG510602
EST:     AATTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGG                         GCACCATATCAAGTGAAACTTATCGATTTAGACGAGTTGACACGGGAAGAG
genomic: AATTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGGgtacttactc ... ctctctccagGCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGGAAGAG
EST: gi|86087805|gb|DR383564.1|DR383564
EST:     AATTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGG                         GCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGGAAGAG
genomic: AATTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGGgtacttactc ... ctctctccagGCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGGAAGAG
EST: gi|125065058|gb|EL132439.1|EL132439
EST:     AGTTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGG                         GCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGG
genomic: AATTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGGgtacttactc ... ctctctccagGCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGG
EST: gi|86064645|gb|DR360402.1|DR360402
EST:     AATTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGG                         GCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGGAAGAG
genomic: AATTCAATTTTGGCGACAAGGGCTACTTGCAATTCGAGCATATCACTTGGgtacttactc ... ctctctccagGCACCATATCAAGTGAAACTTATCGATCTAGACGAGTTGACACGGGAAGAG