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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtacttattgatgataaccttttgaatattacattcttatttatttggaataagcatatttgctgatatatgttcaatgtgccgcatccttagGTCTTCAAGGGTCATGTTGCACTAGGAAATGCTCGGTTTCCAAAGGGAACAAACG

Basic information

species Arabidopsis thaliana
transcript AT4G36760.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064644|gb|DR360401.1|DR360401
EST:     AAAACCTTCAGCTCATGAAAAGGAATGCTATACTGCG                         GTCTTCAAGGGTCATGTTGCACTAGGAAATGCTCGGTTTCCAAAGGGAACA
genomic: AAAACCTTCAGCTCATGAAAAGGAATGCTATACTGCGgtatgtactt ... gcatccttagGTCTTCAAGGGTCATGTTGCACTAGGAAATGCTCGGTTTCCAAAGGGAACA
EST: gi|164223565|gb|ES198963.1|ES198963
EST:     CGGTTCACTTTGGAAAACCTTCAGCTCATGAAAAGGAATGCTATACTGCG                         GTCTTCAAGGGTCATGTTGCACT
genomic: CGGTTCACTTTGGAAAACCTTCAGCTCATGAAAAGGAATGCTATACTGCGgtatgtactt ... gcatccttagGTCTTCAAGGGTCATGTTGCACT
EST: gi|86064645|gb|DR360402.1|DR360402
EST:     AAAACCTTCAGCTCATGAAAAGGAATGCTATACTGCG                         GTCTTCAAGGGTCATGTTGCACTAGGAAATGCTCGGTTTCCAAAGGGAACA
genomic: AAAACCTTCAGCTCATGAAAAGGAATGCTATACTGCGgtatgtactt ... gcatccttagGTCTTCAAGGGTCATGTTGCACTAGGAAATGCTCGGTTTCCAAAGGGAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatttggaataagcatatttgctgatatatgttcaatgtgccgcatccttagGTCTTCAAGGGTCATGTTGCACTAGGAAATGCTCGGTTTCCAAAGGGAACAAACG
                      tgctgat  putative branch site (score: 3)
                                              catcctt  putative PPT
                           atatatgtt  TA-rich tract