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gtttgatttattttcaattgaattacccttttttgattcatgatccgatctcagattacttgattatacgtctactattacttaatcatgtattgttcattgatttgagtgaaagtttcgatttttaaattgtatgtagAGCGAGTATGTTTCTGCACGAGACAAACGCCGTGAGTTCGTGTCTGGATTCAGTGGAAGTGCAG
species | Arabidopsis thaliana |
transcript | AT4G36760.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTCTCCTCCTCTTGATGCTTTGGTTGTTCCTTCCGAAGACTATCACCAG AGCGAGTATGTTTCTACACGAGACAAACGCCGTGAGTTCGTGTCTGGATTCEST: gi|116409976|gb|EG452568.1|EG452568
genomic: ACTCTCCTCCTCTTGATGCTTTGGTTGTTCCTTCCGAAGACTATCACCAGgtttgattta ... ttgtatgtagAGCGAGTATGTTTCTGCACGAGACAAACGCCGTGAGTTCGTGTCTGGATTC
EST: ACTCTCCTCCTCTTGATGCTTTGGTTGTTCCTTCCGAAGACTATCACCAG AGCGAGTATGTTTCTGCACGAGACAAACGCCGTGAGTTCGTGTCTGGATTCEST: gi|86070599|gb|DR366356.1|DR366356
genomic: ACTCTCCTCCTCTTGATGCTTTGGTTGTTCCTTCCGAAGACTATCACCAGgtttgattta ... ttgtatgtagAGCGAGTATGTTTCTGCACGAGACAAACGCCGTGAGTTCGTGTCTGGATTC
EST: ACTCTCCTCCTCTTGATGCTTTGGTTGTTCCTTCCGAAGACTATCACCAG AGCGAGTATGTTTCTGCACGAGACAAACGCCGTGAGTTCGTGTCTGGATTCEST: gi|86070598|gb|DR366355.1|DR366355
genomic: ACTCTCCTCCTCTTGATGCTTTGGTTGTTCCTTCCGAAGACTATCACCAGgtttgattta ... ttgtatgtagAGCGAGTATGTTTCTGCACGAGACAAACGCCGTGAGTTCGTGTCTGGATTC
EST: ACTCTCCTCCTCTTGATGCTTTGGTTGTTCCTTCCGAAGACTATCACCAG AGCGAGTATGTTTCTGCACGAGACAAACGCCGTGAGTTCGTGTCTGGATTCEST: gi|86070600|gb|DR366357.1|DR366357
genomic: ACTCTCCTCCTCTTGATGCTTTGGTTGTTCCTTCCGAAGACTATCACCAGgtttgattta ... ttgtatgtagAGCGAGTATGTTTCTGCACGAGACAAACGCCGTGAGTTCGTGTCTGGATTC
EST: TGTTCCTTCCGAAGACTATCACCAG AGCGAGTATGTTTCTGCACGAGACAAACGCCGTGAGTTCGTGTCTGGATTCEST: gi|86070602|gb|DR366359.1|DR366359
genomic: TGTTCCTTCCGAAGACTATCACCAGgtttgattta ... ttgtatgtagAGCGAGTATGTTTCTGCACGAGACAAACGCCGTGAGTTCGTGTCTGGATTC
EST: ACTCTCCTCCTCTTGATGCTTTGGTTGTTCCTTCCGAAGACTATCACCAG AGCGAGTATGTTTCTGCACGAGACAAACGCCGTGAGTTCGTGTCTGGATTC
genomic: ACTCTCCTCCTCTTGATGCTTTGGTTGTTCCTTCCGAAGACTATCACCAGgtttgattta ... ttgtatgtagAGCGAGTATGTTTCTGCACGAGACAAACGCCGTGAGTTCGTGTCTGGATTC
atcatgtattgttcattgatttgagtgaaagtttcgatttttaaattgtatgtagAGCGAGTATGTTTCTGCACGAGACAAACGCCGTGAGTTCGTGTCTGGATTCAGTGGAAGTGCAG
cattgat putative branch site (score: 4)
atttttaaattgtatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgatttattttcaattgaattacccttttttgattcatgatccgatctcagattacttgattatacgtctactattacttaatcatgtattgttcattgatttgagtgaaagtttcgatttttaaattgtatgtagAGCGAGTATGTTTCTGCACGAGACAAACGCCGTGAGTTCGTGTCTGGATTCAGTGGAAGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG