1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTTGCAGAAGGATCCAAACAGTCGAAGCTCTGCAAAGGAACTGATGgtttgttttatataatcccttttgcatgtttttcatccattgaaatgttgaatcatactctgtgtcaaacaatttcag
species | Arabidopsis thaliana |
transcript | AT4G29810.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTTGCAGAAGGATCCAAACAGTCGAAGCTCTGCAAAGGAACTGATG GAACAATCCTTTCTTGAACAAATACGACTACTCGGGGATCEST: gi|116419429|gb|EG462021.1|EG462021
genomic: TTTGCAGAAGGATCCAAACAGTCGAAGCTCTGCAAAGGAACTGATGgtttgtttta ... acaatttcagGAACA-TCCTTTCTTGAACAAATACGACTACTCGGGGATC
EST: TTTGCAGAAGGATCCAAACAGTCGAAGCTCTGCAAAGGAACTGATG GAACATCCTTTCTTGAACAAATACGACTACTCGGGGATCAATCTCGCGTCCEST: gi|124833558|gb|EH917997.1|EH917997
genomic: TTTGCAGAAGGATCCAAACAGTCGAAGCTCTGCAAAGGAACTGATGgtttgtttta ... acaatttcagGAACATCCTTTCTTGAACAAATACGACTACTCGGGGATCAATCTCGCGTCC
EST: TCGAAGCTCTGCAAAGGAACTGATG GAACATCCTTTCTTGAACAAATACGACTACTCGGGGATCAATCTCGCGTCC
genomic: TCGAAGCTCTGCAAAGGAACTGATGgtttgtttta ... acaatttcagGAACATCCTTTCTTGAACAAATACGACTACTCGGGGATCAATCTCGCGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGCAGAAGGATCCAAACAGTCGAAGCTCTGCAAAGGAACTGATGgtttgttttatataatcccttttgcatgtttttcatccattgaaatgttgaatcatactctgtgtcaaacaatttcag
- - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - AAGGAA