1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtatcttatttgtctcttgagcattgactagtttgaaacccctttcgagtgttataaaaattgagaatcttaatttttcctttttacagCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGCTTGGGTTTAGTAGTACTCGAATGTGCAACAGGAAAGTTCCCTTATGCAC
species | Arabidopsis thaliana |
transcript | AT4G29810.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACATTTGTGGGGACTTACAATTATATGTCT CCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGCEST: gi|116419430|gb|EG462022.1|EG462022
genomic: ACATTTGTGGGGACTTACAATTATATGTCTgtaagtatct ... ctttttacagCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGC
EST: ACACCGCAGGTTTAGCAAACACATTTGTGGGGACTTACAATTATATGTCT CCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGCEST: gi|125042984|gb|EL115253.1|EL115253
genomic: ACACCGCAGGTTTAGCAAACACATTTGTGGGGACTTACAATTATATGTCTgtaagtatct ... ctttttacagCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGC
EST: ACATTTGTGGGGACTTACAATTATATGTCT CCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAAGTGATATATGGAGEST: gi|125211094|gb|EL226048.1|EL226048
genomic: ACATTTGTGGGGACTTACAATTATATGTCTgtaagtatct ... ctttttacagCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAA-GTGATATATGGAG
EST: AACACATTTGTGGGGACTTACAATTATATGTCT CCAGAGAGAATCGTTGGAAEST: gi|125022177|gb|EL094446.1|EL094446
genomic: AACACATTTGTGGGGACTTACAATTATATGTCTgtaagtatct ... ctttttacagCCAGAGAGAATCGTTGGAA
EST: AGGTTTAGCAAACACATTTGTGGGGACTTACAATTATATGTCT CCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGCEST: gi|125185019|gb|EL199973.1|EL199973
genomic: AGGTTTAGCAAACACATTTGTGGGGACTTACAATTATATGTCTgtaagtatct ... ctttttacagCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGC
EST: GGGGACTTACAATTATATGTCT CCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGCEST: gi|125228885|gb|EL242970.1|EL242970
genomic: GGGGACTTACAATTATATGTCTgtaagtatct ... ctttttacagCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGC
EST: ACACCGCAGGTTTAGCAAACACATTTGTGGGGACTTACAATTATATGTCT CCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATAEST: gi|124778428|gb|EH868371.1|EH868371
genomic: ACACCGCAGGTTTAGCAAACACATTTGTGGGGACTTACAATTATATGTCTgtaagtatct ... ctttttacagCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATA
EST: ATTATATGTCT CCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGCEST: gi|116419429|gb|EG462021.1|EG462021
genomic: ATTATATGTCTgtaagtatct ... ctttttacagCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGC
EST: AAACACATTTGTGGGGACTTACAATTATATGTCT CCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGC
genomic: AAACACATTTGTGGGGACTTACAATTATATGTCTgtaagtatct ... ctttttacagCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGC
gaaacccctttcgagtgttataaaaattgagaatcttaatttttcctttttacagCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGCTTGGGTTTAGTAGTACTCGAATGTGCAACAGGAAAGTTCCCTTATGCAC
tcttaat putative branch site (score: 3)
tcttaatttttccttt CT-rich tract
ttataaaaattgagaa TA-rich tract