1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taagatcatttctgtagttctggatagagaaactcagggattaagctcatatcttctagattactgtttgtaatctgtttcgtttgcgactgtgtttcagCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGATATGGTTAAAGTCATTGGCAAAGGAAGTAGTGGTGTTGTTCAGCTGGTTC
species | Arabidopsis thaliana |
transcript | AT4G29810.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTC CTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGATEST: gi|86061176|gb|DR356933.1|DR356933
genomic: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTCgtaagtcttt ... tgtgtttcagCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGAT
EST: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTC CTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGATEST: gi|86061188|gb|DR356945.1|DR356945
genomic: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTCgtaagtcttt ... tgtgtttcagCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGAT
EST: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTC CTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGATEST: gi|86061178|gb|DR356935.1|DR356935
genomic: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTCgtaagtcttt ... tgtgtttcagCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGAT
EST: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTC CTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGATEST: gi|86061190|gb|DR356947.1|DR356947
genomic: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTCgtaagtcttt ... tgtgtttcagCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGAT
EST: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTC CTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGATEST: gi|86061185|gb|DR356942.1|DR356942
genomic: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTCgtaagtcttt ... tgtgtttcagCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGAT
EST: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTC CTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGATEST: gi|86061182|gb|DR356939.1|DR356939
genomic: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTCgtaagtcttt ... tgtgtttcagCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGAT
EST: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTC CTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGATEST: gi|86061177|gb|DR356934.1|DR356934
genomic: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTCgtaagtcttt ... tgtgtttcagCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGAT
EST: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTC CTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGATEST: gi|116419430|gb|EG462022.1|EG462022
genomic: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTCgtaagtcttt ... tgtgtttcagCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGAT
EST: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTC CTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGATEST: gi|86061189|gb|DR356946.1|DR356946
genomic: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTCgtaagtcttt ... tgtgtttcagCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGAT
EST: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTC CTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGATEST: gi|86061180|gb|DR356937.1|DR356937
genomic: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTCgtaagtcttt ... tgtgtttcagCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGAT
EST: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTC CTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGATEST: gi|86061187|gb|DR356944.1|DR356944
genomic: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTCgtaagtcttt ... tgtgtttcagCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGAT
EST: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTC CTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGATEST: gi|86061179|gb|DR356936.1|DR356936
genomic: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTCgtaagtcttt ... tgtgtttcagCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGAT
EST: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTC CTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGATEST: gi|86061186|gb|DR356943.1|DR356943
genomic: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTCgtaagtcttt ... tgtgtttcagCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGAT
EST: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTC CTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGATEST: gi|125028897|gb|EL101166.1|EL101166
genomic: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTCgtaagtcttt ... tgtgtttcagCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGAT
EST: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTC CTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCEST: gi|86061181|gb|DR356938.1|DR356938
genomic: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTCgtaagtcttt ... tgtgtttcagCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTC
EST: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTC CTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGATEST: gi|124799448|gb|EH889127.1|EH889127
genomic: GTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTCgtaagtcttt ... tgtgtttcagCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGAT
EST: TTCTCAATTGGAGCCNGAAGTC CTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTT
genomic: TTCTCAATTGGAGCCTGAAGTCgtaagtcttt ... tgtgtttcagCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTT
ctcatatcttctagattactgtttgtaatctgtttcgtttgcgactgtgtttcagCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGATATGGTTAAAGTCATTGGCAAAGGAAGTAGTGGTGTTGTTCAGCTGGTTC
tttgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagatcatttctgtagttctggatagagaaactcagggattaagctcatatcttctagattactgtttgtaatctgtttcgtttgcgactgtgtttcagCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTTGGATATGGTTAAAGTCATTGGCAAAGGAAGTAGTGGTGTTGTTCAGCTGGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
-aagatca
- - - - - - - - - - - - - - -aaactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtttc