1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgtttctcgatctctctttctccatggatctgtggatagatagatgtatttgtgtgtggaaatgtctctggttttgtttttgaaggaggaaaggttttggttctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTC
species | Arabidopsis thaliana |
transcript | AT4G29810.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGEST: gi|86061176|gb|DR356933.1|DR356933
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT GACTCAAAGCGGTACTTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGEST: gi|86061188|gb|DR356945.1|DR356945
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGEST: gi|86061178|gb|DR356935.1|DR356935
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGEST: gi|86061190|gb|DR356947.1|DR356947
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGEST: gi|86061185|gb|DR356942.1|DR356942
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGEST: gi|86061182|gb|DR356939.1|DR356939
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGEST: gi|86061177|gb|DR356934.1|DR356934
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGEST: gi|116419430|gb|EG462022.1|EG462022
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: GGCGAGCAATCCATCACCAAATTCCT GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGEST: gi|164108342|gb|ES168316.1|ES168316
genomic: GGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: GCTGGCGAGCAATCCATCACCAAATTCCT GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGEST: gi|86061189|gb|DR356946.1|DR356946
genomic: GCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGEST: gi|86061180|gb|DR356937.1|DR356937
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGEST: gi|86061187|gb|DR356944.1|DR356944
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGEST: gi|86061179|gb|DR356936.1|DR356936
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGEST: gi|86061186|gb|DR356943.1|DR356943
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGEST: gi|86061181|gb|DR356938.1|DR356938
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT GACTCAAAGCGGTACTTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
ggaaatgtctctggttttgtttttgaaggaggaaaggttttggttctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTC
ttttggttctctct CT-rich tract
ttttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttctcgatctctctttctccatggatctgtggatagatagatgtatttgtgtgtggaaatgtctctggttttgtttttgaaggaggaaaggttttggttctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATTGGAGCCTGAAGTC
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