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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAACGAAGTAGACGAAGACGATGAAGAAAGGTGGATTCAGCAATAATCTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttctcgatctctctttctccatggatctgtggatagatagatgtatttgtgtgtggaaatgtctctggttttgtttttgaaggaggaaaggttttggttctctctgtag

Basic information

species Arabidopsis thaliana
transcript AT4G29810.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86061183|gb|DR356940.1|DR356940
EST:     CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT                         GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: gi|86061176|gb|DR356933.1|DR356933
EST:     CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT                         GACTCAAAGCGGTACTTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: gi|86061188|gb|DR356945.1|DR356945
EST:     CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT                         GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: gi|86061178|gb|DR356935.1|DR356935
EST:     CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT                         GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: gi|86061190|gb|DR356947.1|DR356947
EST:     CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT                         GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: gi|86061185|gb|DR356942.1|DR356942
EST:     CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT                         GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: gi|86061182|gb|DR356939.1|DR356939
EST:     CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT                         GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: gi|86061177|gb|DR356934.1|DR356934
EST:     CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT                         GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: gi|116419430|gb|EG462022.1|EG462022
EST:     GGCGAGCAATCCATCACCAAATTCCT                         GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
genomic: GGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: gi|164108342|gb|ES168316.1|ES168316
EST:     GCTGGCGAGCAATCCATCACCAAATTCCT                         GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
genomic: GCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: gi|86061189|gb|DR356946.1|DR356946
EST:     CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT                         GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: gi|86061180|gb|DR356937.1|DR356937
EST:     CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT                         GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: gi|86061187|gb|DR356944.1|DR356944
EST:     CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT                         GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: gi|86061179|gb|DR356936.1|DR356936
EST:     CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT                         GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: gi|86061186|gb|DR356943.1|DR356943
EST:     CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT                         GACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
EST: gi|86061181|gb|DR356938.1|DR356938
EST:     CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCT                         GACTCAAAGCGGTACTTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG
genomic: CTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttct ... ctctctgtagGACTCAAAGCGGTACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGAACGAAGTAGACGAAGACGATGAAGAAAGGTGGATTCAGCAATAATCTCAAGCTCGCAATTCCTGTTGCTGGCGAGCAATCCATCACCAAATTCCTgtatgtttctcgatctctctttctccatggatctgtggatagatagatgtatttgtgtgtggaaatgtctctggttttgtttttgaaggaggaaaggttttggttctctctgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT