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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTCGGATTTGGATATGGTTAAAGTCATTGGCAAAGGAAGTAGTGGTGTTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattggttaaccttcagattcttttatgtatatgatgagctaaattcctcatcttttctctgtgtttgaagatttacaaatctttttcttccttgccttgtcactcactgtgcataactctgatgctatatgattag

Basic information

species Arabidopsis thaliana
transcript AT4G29810.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86061176|gb|DR356933.1|DR356933
EST:     GTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTACGACCTTGAAG                         GTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGA
genomic: GTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTT-CG-CCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGA
EST: gi|124765567|gb|EH855697.1|EH855697
EST:     CTGGTTCAACACAAATGGACTGGCCGATTTTTCGCCTTGAAG                         GTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
genomic: CTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
EST: gi|86061188|gb|DR356945.1|DR356945
EST:     TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAG                         GTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
genomic: TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
EST: gi|86061178|gb|DR356935.1|DR356935
EST:     TTGTTCAGCTGGTTCAACACAAATAGACTGGCCAATTTTTCGCCTTGAAG                         GTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
genomic: TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
EST: gi|86061190|gb|DR356947.1|DR356947
EST:     TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAG                         GTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
genomic: TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
EST: gi|86061185|gb|DR356942.1|DR356942
EST:     TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAG                         GTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
genomic: TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
EST: gi|86061182|gb|DR356939.1|DR356939
EST:     TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCSTTGAAG                         GTCATTCAACTAAATATTGATGAAGCAAT--GCAAGGCAATTGCACAAGAG
genomic: TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
EST: gi|125084018|gb|EL144386.1|EL144386
EST:     TTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAG                         GTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCAACAAGA
genomic: TTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCA-CAAGA
EST: gi|86061177|gb|DR356934.1|DR356934
EST:     TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAG                         GTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
genomic: TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
EST: gi|116419430|gb|EG462022.1|EG462022
EST:     TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAG                         GTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
genomic: TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
EST: gi|86061189|gb|DR356946.1|DR356946
EST:     TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAG                         GTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
genomic: TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
EST: gi|86061180|gb|DR356937.1|DR356937
EST:     TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAG                         GTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
genomic: TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
EST: gi|86061187|gb|DR356944.1|DR356944
EST:     TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAG                         GTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
genomic: TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
EST: gi|86061179|gb|DR356936.1|DR356936
EST:     TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAG                         GTCATTCAACTAAATATTGATGAAGCAAT--GCAAGGCAATTGCACAAGAG
genomic: TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
EST: gi|86061186|gb|DR356943.1|DR356943
EST:     TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAG                         GTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
genomic: TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
EST: gi|124972869|gb|EL046536.1|EL046536
EST:     TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAG                         GTCATTCAACTAAATATCGATGAAGCAATTCGCAAGGCAATTG
genomic: TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTG
EST: gi|86061181|gb|DR356938.1|DR356938
EST:     TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAG                         GTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
genomic: TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGTCGGATTTGGATATGGTTAAAGTCATTGGCAAAGGAAGTAGTGGTGTTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattggttaaccttcagattcttttatgtatatgatgagctaaattcctcatcttttctctgtgtttgaagatttacaaatctttttcttccttgccttgtcactcactgtgcataactctgatgctatatgattag

- - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG